These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 821 fasta sequence [ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC-AAATTCCATCATTG-CGGAATTTGCAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA] [+] EMBL CB621536 [ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC AAA ] [+] EMBL CF337209 [ ttttttTTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACC ] [-] EMBL AU032484 [ tttTTTTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCNTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAA NAACAGAATAAAGGATTCAATAACTGACTTTGGNTGGGTGTCCCACTTGGATGCAGCATTCACAAAATTCCATCATTGACGGAAT ] [-] EMBL AU093406 [ tttTTTTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCNGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCNCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAANTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTNAC AAATTC ] [+] EMBL CB676414 [ AAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC AAATTCCATCATTG CAGAAATTGCAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA] consensusID : consensus_10624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 335 fasta sequence [TTTTGGCCGACAAAGAATTGTACCCCTGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATTGCAAGAGTCACAGAGGA] [-] EMBL OSS10429A [TTTTGGCCGACAAAGAATTGTACCCCTGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATTGCAAGAGTCACAGAGGA] [-] EMBL OSS10623A [ GGAAANTNCCCNTGGGCCAATGNNCCTGAGNTCCCAAGGCGAAACCAAAGCTCCTCAACCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGANTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCANAAATGCATTGCAAGAGTNACAGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10624#0 ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTA 60 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 TTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAA 120 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 AAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATG 180 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 TCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGG 240 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 ATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGG 300 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 CACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGA 360 consensus_10624#1 ------------------------------------------------------------ consensus_10624#0 GGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAA-GAATTGTACCCC 419 consensus_10624#1 ----------------------------------TTTTGGCCGACAAAGAATTGTACCCC 26 * ** * ****** ************ consensus_10624#0 TGGTCTTCCCA---TTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCAC 476 consensus_10624#1 TGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAAC 86 *** * * ** ******** **** ***************************** ** consensus_10624#0 TTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAA 536 consensus_10624#1 TTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAA 146 ****************************************** ***************** consensus_10624#0 GCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTG 596 consensus_10624#1 GCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTG 206 ************************************************************ consensus_10624#0 ACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCGGAATTTG 656 consensus_10624#1 ACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTG 266 **************************************************** *** *** consensus_10624#0 CAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAA-TGCATTTGTGAAGA 715 consensus_10624#1 CAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATT-GCAAGAG 325 ***************** **** ** *** * * * *** ****** * * consensus_10624#0 ACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGAT 775 consensus_10624#1 TCACAGAGGA-------------------------------------------------- 335 * * *** consensus_10624#0 CCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA 821 consensus_10624#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||