These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1271 fasta sequence [ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCATTGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGTTGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAAAACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTCTTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTGAAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATACATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCAACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTATGGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCTGATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGATGCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAATGCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCTATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTGGTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTCAATGGGACATCTTGTTGTTTGCATATCATCCAAATAGTTATGACAAAGTTTAAGAAGATAGATTAATATGTGATAATCA] [+] EMBL AK059445 [ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCATTGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGTTGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAAAACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTCTTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTGAAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATACATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCAACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTATGGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCTGATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGATGCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAATGCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCTATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTGGTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTCAATGGGACATCTTGTTGTTTGCATATCATCCAAATAGTTATGACAAAGTTTAAGAAGATAGATTAATATGTGATAATCA] consensusID : consensus_1063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAGATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCGTCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGCGGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACTTTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCCTTAATGNGCTATAGTAGTGATCTAATGNGATGAT] [+] EMBL CA766173 [TGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAGATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCGTCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGCGGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACTTTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCCTTAATGNGCTATAGTAGTGATCTAATGNGATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1063#0 ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCAT 60 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 TGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGT 120 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 TGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAA 180 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 AACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTC 240 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 TTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTG 300 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 AAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATAC 360 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 ATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCA 420 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 ACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTAT 480 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 GGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCT 540 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 GATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGAT 600 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 GCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAAT 660 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 GCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCT 720 consensus_1063#1 ------------------------------------------------------------ consensus_1063#0 ATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTT 780 consensus_1063#1 ---------------------------------TGGGATATTTTTAGGAGGGAAGATGTT 27 *************************** consensus_1063#0 CCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCT 840 consensus_1063#1 CCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCT 87 ************************************************************ consensus_1063#0 GCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACAC 900 consensus_1063#1 GCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACAC 147 ************************************************************ consensus_1063#0 AAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGG 960 consensus_1063#1 AAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGG 207 ************************************************************ consensus_1063#0 GAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACC 1020 consensus_1063#1 GAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACC 267 ************************************************************ consensus_1063#0 AAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAG 1080 consensus_1063#1 AAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAG 327 ************************************************************ consensus_1063#0 GACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTG 1140 consensus_1063#1 GACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAG 387 *************************************************** * * * consensus_1063#0 GTTCAAA--------ATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTC 1192 consensus_1063#1 ATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCG 447 * ** ** **** *** * ** * * * *** *** consensus_1063#0 AATGGGACATCTTGTTGTTTGCAT----ATCATC--CAAATAG-----TTATGACAAAGT 1241 consensus_1063#1 TCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGC 507 * ** * ** ****** ** ** ***** * ** ** **** consensus_1063#0 TTAAGAAGATAGATTAATATGTG-ATAATCA----------------------------- 1271 consensus_1063#1 GGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACT 567 * * ** ** * ** * * * * consensus_1063#0 ------------------------------------------------------------ consensus_1063#1 TTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCC 627 consensus_1063#0 ---------------------------------- consensus_1063#1 TTAATGNGCTATAGTAGTGATCTAATGNGATGAT 661 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||