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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1277 fasta sequence
[TCGACAGCCAACTCGAAACTCGCAACCGAAGCCGAGAGCTCGGCGAGGCCTGCGCGTTCCACCCGCGCGGCGGCGGAGGCGGCGGCGGCGGCGGAGGAGGAGGCTGCTGTGGGGAAGGGCTCCGGGAGGGGAGGGGGGATCCAACCGAGTATCCGAGGGGGCGCGGCGCGGCGCCGTCATGAGGCGCTCCTCGAAGAAGTCGTCGTCGTCCGCCGCGGCGGCCACCGCCGGTACAACTAGGGGAGTTTCAAAGGAAATTGAACGGATCGACCAACTTTTCTATACCTATGCTGACAGCTCATCGGGCATGATTGATCCAGAAGGCATCGAAACACTCTGTTCTCACCTTGAAGTTCCTCATACAGATGTCCGGATTCTGATGTTAGCATGGAAAATGGGGTGTGAAAAGCAAGGGTATTTTACTTTGGATGAATGGCGGTCAGGATTGAAAGCTCTGCGAGCTGATACTATCAACAAATTGAAGAAAGCATTTCCAGAACTGGTGCAAGAAGTTACAAGGCCATCAAATTTCCAGGATTTCTATCCATATGCCTTTCGTTACTGCCTGACAGAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGCTGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAGCTCTCTTTTATTCAAGTGCTGGTGAAGATGTGGTTCAAATGTAGTATTCAAGAATGCTTTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGGTGGAGGCTGGTTTCAGCATGATCATTCAATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAGAAAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTG-CTTGGATATGCTCTATATTTGTGAGACTCAATGCTATTATTG-CA-TTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAG-CA-TGGAAATTGGCTGAGAAAGG-CA-TGTGTAGCTATGTTGTTTGCTACCTCTTCAACGGTGCTTAGAAGAACAGACCCCCCCCTGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATAAAAAAAAAAAA]
[+] EMBL CB661910 [TCGACAGCCAACTCGAAACTCGCAACCGAAGCCGAGAGCTCGGCGAGGCCTGCGCGTTCCACCCGCGCGGCGGCGGAGGCGGCGGCGGCGGCGGAGGAGGAGGCTGCTGTGGGGAAGGGCTCCGGGAGGGGAGGGGGGATCCAACCGAGTATCCGAGGGGGCGCGGCGCGGCGCCGTCATGAGGCGCTCCTCGAAGAAGTCGTCGTCGTCCGCCGCGGCGGCCACCGCCGGTACAACTAGGGGAGTTTCAAAGGAAATTGAACGGATCGACCAACTTTTCTATACCTATGCTGACAGCTCATCGGGCATGATTGATCCAGAAGGCATCGAAACACTCTGTTCTCACCTTGAAGTTCCTCATACAGATGTCCGGATTCTGATGTTAGCATGGAAAATGGGGTGTGAAAAGCAAGGGTATTTTACTTTGGATGAATGGCGGTCAGGATTGAAAGCTCTGCGAGCTGATACTATCAACAAATTGAAGAAAGCATTTCCAGAACTGGTGCAAGAAGTTACAAGGCCATCAAATTTCCAGGATTTCTATCCATATGCCTTTCGTTACTGCCTGACAGAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGCTGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAG ]
[-] EMBL CB655288 [ ATCAACAAATTGAAGAAAGCATTTCCAGAACTGGTGCAAGAAGTTACAAGGCCATCAAATTTCCAGGATTTCTATCCATATGCCTTTCGTTACTGCCTGACAGAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGCTGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAGCTCTCTTTTATTCAAGTGCTGGTGAAGATGTGGTTCAAATGTAGTATTCAAGAATGCTTTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGGTGGAGGCTGGTTTCAGCATGATCATTCAATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAGAAAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTG CTTGGATATGCTCTATATTTGTGAGACTCAATGCTATTATTG CA TTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAG CA TGGAAATTGGCTGAGAAAGG CA TGTGTAGCTATGTTGTTTGCTACCTCTTCAACGGTGCTTAGAAGAACA ]
[+] EMBL BM038648 [ TTTGAAGCTAG AAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCCTTGGATATGCTCTATATTTGTGAGACTCAATGCTATTATTGCCACTTGGATGGGTTTTTTTTAGGTATAGCTTCCAAAGCCACTGGAAATTGGCTGAGAAAGGCCACTGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGANCAGACCCCCCCCTGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATAAAAAAAAAAAA]
consensusID : consensus_10633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 790 fasta sequence
[GTGGAAAGAAGCAAAAGCAGGCGGCAGCGGCGGAGAATACCAGTTGCTTGTGAGCTGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTA-CGAGAAAATA-AAAGTTAGCTCTCTTTTATTCA-AGTGCTGGTGAAGATGTGGTTCAAATGTAGTATTCA-AGAATGCT-TTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGG-TGGAGGCTGGTTTCAGAATGATCATTCA-ATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAG-AAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATAT-TTGTGAGACTCAATGCTATTATTGCA-TTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAAA-TTGGCTGAGAAAGGCATGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATATTTCATTCTGTATAGGTTTATTCATCAGCAGCTACCGACTATGAAAATGACTCATCTTATTGGCTCTTTGGTAAAGCAGTTGGA]
[-] EMBL CB634387 [GTGGAAAGAAGCAAAAGCAGGCGGCAGCGGCGGAGAATACCAGTTGCTTGTGAGCTGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTA CGAGAAAATA AAAGTTAGCTCTCTTTTATTCA AGTGCTGGTGAAGATGTGGTTCAAATGTAGTATTCA AGAATGCT TTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGG TGGAGGCTGGTTTCAGAATGATCATTCA ATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAG AAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATAT TTGTGAGACTCAATGCTATTATTGCA TTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAAA TTGGCTGAGAAAGGCATGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATATTTCATTCTGTATAGGTTTATTCATCAGCAGCTACCGACTATGAAAATGACTCATCTTATTGGCTCTTTGGTAAAGCAGTTGGA]
[+] EMBL BQ907321 [ GCTTGGCCTCTTATTTTGGACCATTTTGTTGAATGGTTACCGAGAAAATACAAAGTTAGCTCTCTTTTATTCACAGTGCTGGTGAAGATGTGGTTCNAATGTAGTATTCACAGAATGCTNTTCAGCACCTTGGGGGGCCTCTGAAGGATGCCATTTCAGTTTTCATAGTTCTGTGGCTGGAGGCTGGTTTCAGAATGATCATTCACATCCCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAG AAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATATCTTGTGAGACTCAATGCTATTATTGCACTTGGATGGGTTTTTTTTAGGTATAGCTTC AAAGCATGGAAACTTGGCTGAGAAAGGCATGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATATTTCATTCTGTATAGGTTTATTCATCAGCAGCTACCGACTAAAAAAA ]
[+] EMBL AK059480 [ TTA CGAGAAAATA AAAGTTAGCTCTCTTTTATTCA AGTGCTGGTGAAGATGTGGTTCAAATGTAGTATTCA AGAATGCT TTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGG TGGAGGCTGGTTTCAGCATGATCATTCA ATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAGAAAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATAT TTGTGAGACTCAATGCTATTATTGCA TTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAAA TTGGCTGAGAAAGGCATGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATATTTCATTCTGTATAGGTTTATTCATCAGCAGCTACCGACTATGAAAATGACTCATCTTATTG ]
consensusID : consensus_10633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[GGGCTCCGGGANGGGAAGGGGGATCCAACCTTTTATCCCAGGGGGCGCGGCGCGGCGCCCTCATGAAGCCCTCCTCCAAAAAATCGTCGTCCTCCGCCGCGGCGGCCACCGNCGGTACAACTNCGGGANTTTCAAANGAAATTGAACGGATCGACCAACTTTTCTATACCTATGCTGACAGCTCNTCGGGCATGATTGATCCAGAANGCATCCAAACACTCTGTTCTCACCTTGAANTTCCTCNTACAGATGTCCGGATTCTGATNTTAGCATGGAANATGGGGTGTGAAAAGCAACGGTATNTTTCTTTNNNTTAATGGCGGTCAGATTGAANCTCTGCCNANCTGATACNNTCCACAAATTGAAGAAANCATTTCCCCAACTGGTGCAAGAANTTACTANGNCCCCAATTTCCNGAATTCNNTCCACATGC]
[+] EMBL AA753230 [GGGCTCCGGGANGGGAAGGGGGATCCAACCTTTTATCCCAGGGGGCGCGGCGCGGCGCCCTCATGAAGCCCTCCTCCAAAAAATCGTCGTCCTCCGCCGCGGCGGCCACCGNCGGTACAACTNCGGGANTTTCAAANGAAATTGAACGGATCGACCAACTTTTCTATACCTATGCTGACAGCTCNTCGGGCATGATTGATCCAGAANGCATCCAAACACTCTGTTCTCACCTTGAANTTCCTCNTACAGATGTCCGGATTCTGATNTTAGCATGGAANATGGGGTGTGAAAAGCAACGGTATNTTTCTTTNNNTTAATGGCGGTCAGATTGAANCTCTGCCNANCTGATACNNTCCACAAATTGAAGAAANCATTTCCCCAACTGGTGCAAGAANTTACTANGNCCCCAATTTCCNGAATTCNNTCCACATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10633#0 TCGACAGCCAACTCGAAACTCGCAACCGAAGCCGAGAGCTCGGCGAGGCCTGCGCGTTCC 60
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 ACCCGCGCGGCGGCGGAGGCGGCGGCGGCGGCGGAGGAGGAGGCTGCTGTGGGGAAGGGC 120
consensus_10633#2 --------------------------------------------------------GGGC 4
consensus_10633#1 -----GTGGAAAGAAGCAAAAGCAGGCGGCAGCGGCGGAGAATACCAGTTGCTTGTGAGC 55
* **
consensus_10633#0 TCCGGGAGG-GGAGGGGGGATCCAACCGAGTATCCGAGGGGGCGCGGCGCGGCGCCGTCA 179
consensus_10633#2 TCCGGGANG-GGAAGGGGGATCCAACCTTTTATCCCAGGGGGCGCGGCGCGGCGCCCTCA 63
consensus_10633#1 TGCTGAATCTAGTATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACC 115
* * * * * *** * * ** *** * * * * *
consensus_10633#0 TGAGGCGCTCC------TCGAAGA----AGTCGTCGTCGTCCGCCGCGGCGGCCACCGCC 229
consensus_10633#2 TGAAGCCCTCC------TCCAAAA----AATCGTCGTCCTCCGCCGCGGCGGCCACCGNC 113
consensus_10633#1 TCAAGCACCAAAGTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTT 175
* * ** * * ** * * * * * * *** * **
consensus_10633#0 GGTACAACTAGGGGAGTTTCAAAGGAAATTGAACGGATCGACCA-ACTTTTCTATACCT- 287
consensus_10633#2 GGTACAACTNCGGGANTTTCAAANGAAATTGAACGGATCGACCA-ACTTTTCTATACCT- 171
consensus_10633#1 TCTGCAATGAGATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTC 235
* *** * *** * * * * ** ** ** ** ** ***
consensus_10633#0 --ATGCTGACAGCTCATCGGGCATGATTGATCCAGAAGGCATCGAAACACTCTGTT-CTC 344
consensus_10633#2 --ATGCTGACAGCTCNTCGGGCATGATTGATCCAGAANGCATCCAAACACTCTGTT-CTC 228
consensus_10633#1 TTATTTTGGACAATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAGCTCTCTTTTATTC 295
** ** * * * *** ** * ** * * * **** ** **
consensus_10633#0 ACCT-----TGAAGTTCCTCATACAGATGTCCGGATTC-----TGATGTTAGCATGGAAA 394
consensus_10633#2 ACCT-----TGAANTTCCTCNTACAGATGTCCGGATTC-----TGATNTTAGCATGGAAN 278
consensus_10633#1 AAGTGCTGGTGAAGATG-TGGTTCAAATGTA-GTATTCAAGAATGCTTTCAGCACCTTGG 353
* * **** * * * ** **** * **** ** * * ****
consensus_10633#0 ATGGGGTGTGAAAA--GCAAGGGTATTTTACTT--TGGATGAATGGCGGTCAGGATT-GA 449
consensus_10633#2 ATGGGGTGTGAAAA--GCAACGGTATNTTTCTT--TNNNTTAATGGCGGTCAG-ATT-GA 332
consensus_10633#1 GGGGCCTCTGAAGGATGCAATTTCAGTTTTCATAGTTCTGTGGTGGAGGCTGGTTTCAGA 413
** * **** **** * ** * * * *** ** * * **
consensus_10633#0 AAGCTCTGCGAGCTGATACTAT---CAACAAATTGAAGAAAGCATTTCCAGAACTGGTGC 506
consensus_10633#2 ANCTCTGCCNANCTGATACNNT---CCACAAATTGAAGAAANCATTTCCCCAACTGGTGC 389
consensus_10633#1 ATGATCATTCAATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAGAAA 473
* * * * ** ***** * ** *
consensus_10633#0 AAGAAGTTACAAGGCCATCAAATTTCCAGGATTTCTATCCATATGCCTTTCGTTACTGCC 566
consensus_10633#2 AAGAANTTACTANGNC-CCCAATTTCCNGAATT-CNNTCCACATGC-------------- 433
consensus_10633#1 AAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATATTTGTGAG 533
** ** * * * ** * ** * * ****
consensus_10633#0 TGACAGAGGATAAGAAGAAGTGTATAGAAATACCAGTTGCTTGTGAGCTGCTGAATCTAG 626
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ACTCAATGCTATTATTGCATTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAA 593
consensus_10633#0 TATTGGGGTTGCAGTTTCGCCCCCAGGTTGACAAACTTGTTAACTACCTCAAGCACCAAA 686
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ATTGGCTGAGAAAGGCATGTGTAGCTATGTTGTTTGCTACCTCTTCTCCCTTGCTTAGAA 653
consensus_10633#0 GTGAATACAAGGTGATAAACATGGACCAGTGGATGGGCTTTCTTCGTTTCTGCAATGAGA 746
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 GAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATATTTCATT 713
consensus_10633#0 TAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTCTTATTTTGGACA 806
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 CTGTATAGGTTTATTCATCAGCAGCTACCGACTATGAAAATGACTCATCTTATTGGCTCT 773
consensus_10633#0 ATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAGCTCTCTTTTATTCAAGTGCTGGTGA 866
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 TTGGTAAAGCAGTTGGA------------------------------------------- 790
consensus_10633#0 AGATGTGGTTCAAATGTAGTATTCAAGAATGCTTTCAGCACCTTGGGGGGCCTCTGAAGG 926
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 ATGCAATTTCAGTTTTCATAGTTCTGTGGTGGAGGCTGGTTTCAGCATGATCATTCAATC 986
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 GCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTGAAGCTAGAAAAAAAAAAGTTTGAA 1046
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 GAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATATTTGTGAGACTCAATGCTATT 1106
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 ATTGCATTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAAATTGGCTGAGAAA 1166
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 GGCATGTGTAGCTATGTTGTTTGCTACCTCTTCAACGGTGCTTAGAAGAACAGACCCCCC 1226
consensus_10633#2 ------------------------------------------------------------
consensus_10633#1 ------------------------------------------------------------
consensus_10633#0 CCTGTCCTTTATTTGTGTACCCCCGTTATTTTAGGGGATAAAAAAAAAAAA 1277
consensus_10633#2 ---------------------------------------------------
consensus_10633#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||