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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1162 fasta sequence
[CGCTCACACTGCCAAGATAACATGTATCTATGTGAGCCAGCCTTACTCATTAATTGTCTCTGGCTCCGATGACTGTTCAGTGATCTTGTGGGACCTGACAAGCCTGGCCTTTGTGAAGCAGCTGCCAAGGTTCCCAGCATCAGTGTCTGCGTTACATGTGAACAATCTCACTGGTGAGATCCTGACTGGTGCCGGTGTTCTTTTTGCTGTTTGGAGCGTCAACGGAGACTGTCTTGCTGTGGTTAATACCTCTCAGCTTCCTTCGGATCTCATCCTGTCTGTGGCAAGCACTACAAACTCGGACTGGCAGGACACAAACTGGTACGTGACAGGTCATCAAAGCGGTGCTGTGAAGGTATGGAAGATGGTGCACTACACGTCTGATGAGGCAGCAAACAGCAAGAGCAAATCTCCACCGTCCACCCTTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCTTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATATGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACACACT-GGAAGGGATAAAATGGAGAT-GGCGTTGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCTTGTTTTTTCACGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATCTTGTACGGTGAAGAGGTTATTTTTCGTCTTGGGGATGTAA-GAAAGGGGTGTTAGGTTCCCAAACTTTTCTGGTTTGGTTCTCTATTTTGGCCCCAGAAGNGGNGGGGTTCATTCAAAAAAAAAAAAAA]
[+] EMBL CA762001 [CGCTCACACTGCCAAGATAACATGTATCTATGTGAGCCAGCCTTACTCATTAATTGTCTCTGGCTCCGATGACTGTTCAGTGATCTTGTGGGACCTGACAAGCCTGGCCTTTGTGAAGCAGCTGCCAAGGTTCCCAGCATCAGTGTCTGCGTTACATGTGAACAATCTCACTGGTGAGATCCTGACTGGTGCCGGTGTTCTTTTTGCTGTTTGGAGCGTCAACGGAGACTGTCTTG ]
[+] EMBL CB096601 [ GCATCAGTGTCTGCGTTACATGTGAACAATCTCACTGGTGAGATCCTGACTGGTGCCGGTGTTCTTTTAGCTGTTTGGAGCGTCAACGGAGACTGTCTTGCTGTGGTTAATACCTCTCAGCTTCCTTCGGATCTCATCCTGTCTGTGGCAAGCACTACAAACTCGGACTGGCAGGACACAAACTGGTACGTGACAGGTCATCAAAGCGGTGCTGTGAAGGTATGGAAGATGGTGCACTACACGTCTGATGAGGCAGCAAACAGCAAGAGCAAATCTCCACCGTCCACCCTTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCTTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAATTGGCCTCGGCATGCAGAAACATTCTACAATATGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACACACTGGGAAGGGATAAAATGGAGATGGGCGTTGTGCTGACATTACAATCTTATTATACTGGGAATTATCTACCGGNTCTACCTCATCTTCTTGGTTTTTt ]
[-] EMBL CB665787 [ CAATCACCAAGAGCAAATCTCCACCGTCCACCCTTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCCCAAGCACCCGGTCACTGCCCTTTGTCTCCCACCCGCCCTGAAGCAGCTTTTGAGCGGGGATGCCAGTGCCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCACCAGCTCAACAGAGGATAGTCAGGATTCCCCTGCCCATATAGAGACCCTTAGTTAAGTTATATCCCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATATGGTTGGCCCAGGCCCCACCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACACCGGAACCCCCCT GGAAGGGATAAAATGGAGAT GGCGTTGTGCTGCCATTCCAATCTTATTATACTGTGAATTATCTGCCGGTTCTCCCTCATCTTCTTGTTTTTTCACGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATCTTGTACGGTGAAGAGGTTATTTTTCGTCTTGGGGATGTAAGGAAAGGGGTGTTAGGTTCCCAAA ]
[+] EMBL CA766853 [ CTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCTTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATATGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACACACT GGAAGGGATAAAATGGAGAT GGCGTTGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCTTGTTTTTTCATGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGNTTGTATAGGATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATGTTGTACGGTGAAGATGNTATTTTTCGTCTTGGGGATGTAA GNAAGGGGTGGTANGGTCCTCTTCTTTTCTGGTTTGGTTCTCTATTTTGGCCCCAGAAGNGGNGGGGTTCATTCAAAAAAAAAAAAAA]
[+] EMBL OSR3221A [ AGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCTTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATATGGTTGGCCCAGGNCCCAGCCCATTCAGCAAAATC ]
consensusID : consensus_10634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CACTTTTTCCCATGGTCCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTTCAACAGNGGATAGTCAGGATTCACCTGCCACATTATAGAGACCCTTAGTTAAAGTTATATACCCTCTGGTCCCTTTCTCACCCAGAATCTGACAAGCACCNGCTTGTGCTGCCAAAGAAAGACCCCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATNTGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACACACTGGAAGGGATAAAATGGAGATGGCGTTGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCTTGTTTTTTCATGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATGTTGTACGGTGAAGATGTTATTTTTCGTCTTGGGGATGTAAGGAAAGGGGTGTTAGGTTCCTCTTCTTTTTCTGTTTTGTTTCTCTATTTTGTCCCCAGAAGTGGTGGTGTTCATTCATTGACTGGGTGTAATTTGAGCACCCTTCTGTTCACTTCAGTTCATTTGCACATACATGCAAAAAAAAAAAAAAAAAA]
[+] EMBL C96769 [CACTTTTTCCCATGGTCCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTTCAACAGNGGATAGTCAGGATTCACCTGCCACATTATAGAGACCCTTAGTTAAAGTTATATACCCTCTGGTCCCTTTCTCACCCAGAATCTGACAAGCACCNGCTTGTGCTGCCAAAGAAAGACCCCAGAGTTGGCCTCGGCATGCAGAAACATTCTACAATNTGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACACACTGGAAGGGATAAAATGGAGATGGCGTTGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCTTGTTTTTTCATGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATGTTGTACGGTGAAGATGTTATTTTTCGTCTTGGGGATGTAAGGAAAGGGGTGTTAGGTTCCTCTTCTTTTTCTGTTTTGTTTCTCTATTTTGTCCCCAGAAGTGGTGGTGTTCATTCATTGACTGGGTGTAATTTGAGCACCCTTCTGTTCACTTCAGTTCATTTGCACATACATGCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10634#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[TGTCTGTGGCAAGCACTACAAACTCGGACTGGCAGGACACAAACTGGTACGTGACAGGTCATCAAAGCGGTGCCGTGAAGGTATGGAAGATGGTGCACTACACGTCTGATGAGGCAGCAAACAGCAAGAGCAAATCTCCACCGTCCACCCTTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCGTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTGGGCCAACCATATTGTAGAATGTTTCTGCATGCCGAGGTTCTAG]
[-] EMBL BU667065 [TGTCTGTGGCAAGCACTACAAACTCGGACTGGCAGGACACAAACTGGTACGTGACAGGTCATCAAAGCGGTGCCGTGAAGGTATGGAAGATGGTGCACTACACGTCTGATGAGGCAGCAAACAGCAAGAGCAAATCTCCACCGTCCACCCTTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTCTTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACCTGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTTGTTCTCATGGTCACTAAAAGATGATAGCTTTAAGGTTTCATAGCAACAGCTCAACAGAGGATAGTCAGGATTCACCTGCACATATAGAGAGCCGTAGTTAAGTTATATACCTCTGGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTGGGCCAACCATATTGTAGAATGTTTCTGCATGCCGAGGTTCTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10634#0 CGCTCACACTGCCAAGATAACATGTATCTATGTGAGCCAGCCTTACTCATTAATTGTCTC 60
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 TGGCTCCGATGACTGTTCAGTGATCTTGTGGGACCTGACAAGCCTGGCCTTTGTGAAGCA 120
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 GCTGCCAAGGTTCCCAGCATCAGTGTCTGCGTTACATGTGAACAATCTCACTGGTGAGAT 180
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 -------------------------------------CACTTTTTCCCATGGTCCACTAA 23
consensus_10634#0 CCTGACTGGTGCCGGTGTTCTTTTTGCTGTTTGGAGCGTCAACGGAGACTGTCTTGCTGT 240
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 AAGATGATAGCTTTAAGGTTTCATAGCAACAGCTTCAACAGNGGATAGTCAGGATTCACC 83
consensus_10634#0 GGTTAATACCTCTCAGCTTCCTTCGGATCTCATCCTGTCTGTGGCAAGCACTACAAACTC 300
consensus_10634#2 -----------------------------------TGTCTGTGGCAAGCACTACAAACTC 25
consensus_10634#1 TGCCACATTATAGAGACCCTTAGTTAAAGTTATATACCCTCTGGTCCCTTTCTCACCCAG 143
** *** ** *
consensus_10634#0 GGACTGGCAGGACACAAACTGGTACG--TGACAGGTCATCAAAGCGGTGCTGTGAAGGTA 358
consensus_10634#2 GGACTGGCAGGACACAAACTGGTACG--TGACAGGTCATCAAAGCGGTGCCGTGAAGGTA 83
consensus_10634#1 AATCTGACAAG-CACCNGCTTGTGCTGCCAAAGAAAGACCCCAGAGTTGGCCTCGGCATG 202
*** ** * *** ** ** * * * * ** * ** * *
consensus_10634#0 TGGAAGATGGTGCACTACACGTCTGATG-AGGCAGCAAACAGCAAGAGCAAATCTCCACC 417
consensus_10634#2 TGGAAGATGGTGCACTACACGTCTGATG-AGGCAGCAAACAGCAAGAGCAAATCTCCACC 142
consensus_10634#1 CAGAA-ACATTCTACAATNTGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGT 261
*** * * ** * * ** **** ** * ******
consensus_10634#0 GTCCACCC----TTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTC 473
consensus_10634#2 GTCCACCC----TTGGAGGGATGAGCTTGAATGGCCAGACTCAGGAGTACAGGCTACTTC 198
consensus_10634#1 GAAGACACAGTACAACAGAAACACACTGGAAGGGATAAAATGGAGATGGCGTTGTGCTGA 321
* ** * ** * ** *** ** * * * ** * * **
consensus_10634#0 TTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACC 533
consensus_10634#2 TTCAGAAGGTGCTCAAGGCTCACAAGCACCCGGTCACTGCCCTTTGTCTTCCACCCGACC 258
consensus_10634#1 CATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCTTGTTTTTT 381
* * ** ** * * * * * *****
consensus_10634#0 TGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTT----GTTCTCAT-GGTCACTAAA 588
consensus_10634#2 TGAAGCAGCTTCTGAGCGGGGATGCCAGTGGCCACTT----GTTCTCAT-GGTCACTAAA 313
consensus_10634#1 CATGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTT 441
** * * ****** ** * ** * *** ** ** **
consensus_10634#0 AGATGATAGCTTTAAGGTTTC-ATAGCAACA--GCTCAACAGAGGATA-GTCAGGATTCA 644
consensus_10634#2 AGATGATAGCTTTAAGGTTTC-ATAGCAACA--GCTCAACAGAGGATA-GTCAGGATTCA 369
consensus_10634#1 GGTTAGTAGTGGTGAGGGGACGATGGTGATGATGTTGTACGGTGAAGATGTTATTTTTCG 501
* * *** * *** * ** * * * * ** * * * * ** * ***
consensus_10634#0 CCT---GCACATATAGAGAGCCTTAGTTAAGTTA----TATACCTCTGGTTCCTTTCTCA 697
consensus_10634#2 CCT---GCACATATAGAGAGCCGTAGTTAAGTTA----TATACCTCTGGTTCCTTTCTCA 422
consensus_10634#1 TCTTGGGGATGTAAGGAAAGGGGT-GTTAGGTTCCTCTTCTTTTTCTGTTTTGTTTCTCT 560
** * * ** ** ** * **** *** * * **** ** ******
consensus_10634#0 CCCAGAATCTGACAAGCACC--TGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTC 755
consensus_10634#2 CCCAGAATCTGACAAGCACC--TGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTG 480
consensus_10634#1 ATTTTGTCCCCAGAAGTGGTGGTGTTCATTCATTGACTGGGTGTAATTTGAGCACCCTTC 620
* * *** ** * * * * * * * * *** * *
consensus_10634#0 GGCATGCAGAAACATTCTACAATATGGTTG---GCCCAGGCCCCAGCCCATTCAGCAAAA 812
consensus_10634#2 GGC---CAACCATATTGTAGAATGTTTCTGCATGCCGAGGTTCTAG-------------- 523
consensus_10634#1 TGTTCACTTCAGTTCATTTGCACATACATGCAAAAAAAAAAAAAAAAAA----------- 669
* * * * * ** * *
consensus_10634#0 TCTGGGGTGAAGACACAGTACAACAGAAACACACTGGAAGGGATAAAATGGAGATGGCGT 872
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 TGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCTCATCTTCT 932
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 TGTTTTTTCACGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGG 992
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 ATGCTTTTGGTTAGTAGTGGTGAGGGGACGATGGTGATGATCTTGTACGGTGAAGAGGTT 1052
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 ATTTTTCGTCTTGGGGATGTAAGAAAGGGGTGTTAGGTTCCCAAACTTTTCTGGTTTGGT 1112
consensus_10634#2 ------------------------------------------------------------
consensus_10634#1 ------------------------------------------------------------
consensus_10634#0 TCTCTATTTTGGCCCCAGAAGNGGNGGGGTTCATTCAAAAAAAAAAAAAA 1162
consensus_10634#2 --------------------------------------------------
consensus_10634#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||