These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1278 fasta sequence [CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG-CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGTATTTGCTAAATAAGTATGTTTA] [+] EMBL AK100029 [CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAATGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGTATTTGCTAAATAAGTATGTTTA] [+] EMBL CA755362 [ GAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCT CAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCCCGGCGTACCGGCGGGAGTT ] [+] EMBL CB664084 [ ATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCCCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGGCCAGTGGGCGGCGCTACTTCGCCGCCCACGAGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGAGATCTATCTACGCGTTCA ] [+] EMBL CB664038 [ TGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAAGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCG ] [-] EMBL CB664039 [ ATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATT ] [-] EMBL CB664085 [ AAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCCTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGTTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTGGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGCACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCTTAATAACGAACAAAATATTCAAATTGTGGGCCCAATGATTTAAACATATTAAT ] consensusID : consensus_10637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTTGAGAAACCTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCGCGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAACTCGCACGTCGTCGCCGACGCGATCGTGCAG] [+] EMBL CF334144 [CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTTGAGAAACCTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCGCGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAACTCGCACGTCGTCGCCGACGCGATCGTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10637#0 CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAA 60 consensus_10637#1 -------------------------CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAA 35 ************** ******************** consensus_10637#0 GGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGAC 120 consensus_10637#1 GGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTC-----AGTTGAGAAAC 90 ******************************************** ******** ** consensus_10637#0 CTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCC-G 179 consensus_10637#1 CTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCG 150 ************************ * ************* **** ************ * consensus_10637#0 CGGGCCGGGGAGGCTTCT---GCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAG 236 consensus_10637#1 CGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAA 210 *********** ****** ****************************** ******* consensus_10637#0 CTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGG 296 consensus_10637#1 CTCGCACGTCGTCGCCGACGCGATCGTGCAG----------------------------- 241 ***** ************ ************ consensus_10637#0 CAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCT 356 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGG 416 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CGACGGCAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCT 476 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCA 536 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGT 596 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGC 656 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTT 716 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGG 776 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAG 836 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGT 896 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGC 956 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 CGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCA 1016 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCT 1076 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGG 1136 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAAT 1196 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 GTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGT 1256 consensus_10637#1 ------------------------------------------------------------ consensus_10637#0 ATTTGCTAAATAAGTATGTTTA 1278 consensus_10637#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||