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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1278 fasta sequence
[CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG-CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGTATTTGCTAAATAAGTATGTTTA]
[+] EMBL AK100029 [CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAATGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGTATTTGCTAAATAAGTATGTTTA]
[+] EMBL CA755362 [ GAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCT CAGTTGAGAGACCTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCCCGGCGTACCGGCGGGAGTT ]
[+] EMBL CB664084 [ ATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCCCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGGCCAGTGGGCGGCGCTACTTCGCCGCCCACGAGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGAGATCTATCTACGCGTTCA ]
[+] EMBL CB664038 [ TGGACAAGATCGCGATCCCTCCCCGCGGGCCGGGGAGGCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAGCTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGGCAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCTCCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGGCGACGG CAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCTGTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAAGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCG ]
[-] EMBL CB664039 [ ATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCAGGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATT ]
[-] EMBL CB664085 [ AAGGTGTTCGTGCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGCGCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCCTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGTTGGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCAGCGATCGATCTTCGGGCCGCTCGTGGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGCACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAATGTCTTAATAACGAACAAAATATTCAAATTGTGGGCCCAATGATTTAAACATATTAAT ]
consensusID : consensus_10637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTTGAGAAACCTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCGCGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAACTCGCACGTCGTCGCCGACGCGATCGTGCAG]
[+] EMBL CF334144 [CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAAGGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTTGAGAAACCTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCGCGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAACTCGCACGTCGTCGCCGACGCGATCGTGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10637#0 CGCACGGTGGAATCAAGAGAAGATGCAAGCGCAGGACGTGAAGAACGTCTTCTGCATGAA 60
consensus_10637#1 -------------------------CAAGCGCAGGACGTAAAGAACGTCTTCTGCATGAA 35
************** ********************
consensus_10637#0 GGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTCAGTGCAGTTGAGAGAC 120
consensus_10637#1 GGGTGGGCAAGGGGAGTCCAGTTACCTCAAAAACAGTAAAGCTC-----AGTTGAGAAAC 90
******************************************** ******** **
consensus_10637#0 CTGCAAATGATGCTGTATGCCCTGGAGGAGACACTGGACAAGATCGCGATCCCTCCCC-G 179
consensus_10637#1 CTGCAAATGATGCTGTATGCCCTGTATGAGACACTGGACACGATCCCGATCCCTCCCCCG 150
************************ * ************* **** ************ *
consensus_10637#0 CGGGCCGGGGAGGCTTCT---GCTGACGGCGGCCGACCTCGGCTGCTCCTGTGGCCGCAG 236
consensus_10637#1 CGGGCCGGGGAAGCTTCTTCTGCTGACGGCGGCCGACCTCGGCTGCTCCTGCGGCCGCAA 210
*********** ****** ****************************** *******
consensus_10637#0 CTCGCTCGTCGTCGCCGATGCGATCGTGCAGCACATGACCAAGCTGTGTCGCGGTCGCGG 296
consensus_10637#1 CTCGCACGTCGTCGCCGACGCGATCGTGCAG----------------------------- 241
***** ************ ************
consensus_10637#0 CAAGCATGTCGACGCCGTCGCGGCTGCTGATCCGGAGTTCTGGTTCTACTTCTCCGACCT 356
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CCCGAGCAACGACTTCAACACCCTCTTCAGCCTCCTCCCGCCGCACGCCGCTTCCTCCGG 416
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CGACGGCAGTGGGCGGCGCTACTTCGCCGCCGCCGTGCCTGGCTCGTTCCATGACCGTCT 476
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GTTCCCGGAGCGATCTATCGACGTGTTCACCTCCACCTTCTGTCTGCACTGGCTCTCTCA 536
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GGTGCCGGACGAAGTCGCTGATACGCGGTCACCGGCTTACAACAAGGGGAAGGTGTTCGT 596
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GCAGGGCAGCTCGGAGGAGACCGGCACGGCGTACCGGCGGCAGTTCCAGTCCGACATGGC 656
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GCGCTTCCTGCGCTGCCGCGCCGCCGAGCTGAAACCTGGTGGCGCCATGTTCCTAGTCTT 716
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACCTGCTGGG 776
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CACCATGTTCGAGGAGTCGTGGCGTGACCTCGTCGACGAGGGGTTGATCGACGGCGGGAG 836
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GATGGACAGCTTCAACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGT 896
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CGACGCCGACGGCTCGTTCGCTGTCAACCGGCTGGAGCACGTGATGGGAGGCCGTCTCGC 956
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 CGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGAACAACCA 1016
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GCGATCGATCTTCGGGCCGCTCGTCGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCT 1076
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GTTCGTCCGGATGGAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGGACGAGATGGG 1136
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GGTTCGCTTCCACATCTTGTGCTCGCTTTCACTCGTCTAACGATATTTACGTCGTACAAT 1196
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 GTCCTAATAATGAACAAAATATTCAAATTGTGGGCACAATGATTTAAATATATTAATTGT 1256
consensus_10637#1 ------------------------------------------------------------
consensus_10637#0 ATTTGCTAAATAAGTATGTTTA 1278
consensus_10637#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||