These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 482 fasta sequence [ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAACATGGACACCGTCAAGAACGCCGCCAACTACGTCTCCGAGACCGTCCAGAGCGCCACCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG-ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA] [+] EMBL AT003350 [ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAACATGGACACCGTCAAGAACGCCGCCAACTACGTCTCCGAGACCGTCCAGAGCGCCACCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAA ] [+] EMBL AT003646 [ anAGCGCCNCCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA] [+] EMBL AT003594 [ CATTGACGCCCTCAAGGNCAAGGGCACCGAGCCCAAGCACGAATGTTTCGGCCACCGCCAACAAGAAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA] consensusID : consensus_10641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [NGTGGGCCCGCTTCTTAGAANCTTAGGTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCCCACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCCAAGGACAACCAACGCCACCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAAAAAAA] [+] EMBL AT003618 [NGTGGGCCCGCTTCTTAGAANCTTAGGTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCCCACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCCAAGGACAACCAACGCCACCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAAAAAAA] consensusID : consensus_10641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [GGCTNCCAANAACCCNTCCCAGAGNGGNNNNNTTNNGGGGGTTCAAAGNGGNCCNCTAGGAGNNGGCAAGGACCACNNNTCTNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCTTCAAGGNCAANGGCANCGAGCANAAGCGNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCNCTTNGTCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGATTGCTACCAAAAAAAAAAAAA] [+] EMBL AT003605 [GGCTNCCAANAACCCNTCCCAGAGNGGNNNNNTTNNGGGGGTTCAAAGNGGNCCNCTAGGAGNNGGCAAGGACCACNNNTCTNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCTTCAAGGNCAANGGCANCGAGCANAAGCGNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCNCTTNGTCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGATTGCTACCAAAAAAAAAAAAA] consensusID : consensus_10641#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [NAAATNNNACCCGCCCCANCCGGNTCTTGGAAATANACNTCTAGAGCAGATGGTNNTGATANTGTCAANGTCTCTNACAGCNAGATTGCCCTTAGTGGAGAGNACNCCATNATTGGCCTAAAGGTTGTTGNCCATGAGTGATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGGGNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANACGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCTTCATANCAAAAAAAAA] [+] EMBL AT003592 [NAAATNNNACCCGCCCCANCCGGNTCTTGGAAATANACNTCTAGAGCAGATGGTNNTGATANTGTCAANGTCTCTNACAGCNAGATTGCCCTTAGTGGAGAGNACNCCATNATTGGCCTAAAGGTTGTTGNCCATGAGTGATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGGGNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANACGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCTTCATANCAAAAAAAAA] consensusID : consensus_10641#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [CANAGGNAGTNTNNCCCAAGGNCAANAACGGCCAGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCCTCAAGGNCAAGGNCAGCGAGCACAAGCNCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCACCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANACGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGATTGATAACAAAAAAAAAAAAAA] [+] EMBL AT003587 [CANAGGNAGTNTNNCCCAAGGNCAANAACGGCCAGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCCTCAAGGNCAAGGNCAGCGAGCACAAGCNCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCACCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANACGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGATTGATAACAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10641#1 ----------------------------------NGTGGGCCCGCTTCTTAGAANCTTAG 26 consensus_10641#2 ------------------------------------------------------------ consensus_10641#0 ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAAC 60 consensus_10641#4 ------------------------------------------------------------ consensus_10641#3 ------------------------------------------------------------ consensus_10641#1 GTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCC 86 consensus_10641#2 --------------------------------GGCTNCCAANAACCCNTCCCAGAGNGGN 28 consensus_10641#0 ATGGACACCGTCAAGAACGCCGCCAACT-----ACGTCTCCGAGACCGT-CCAGAGCGCC 114 consensus_10641#4 ------------------------------------------------------------ consensus_10641#3 -----------------------------------NAAATNNNACCCGCCCCANCCGGNT 25 consensus_10641#1 CACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCC-AAGGACAACCAACG-C 144 consensus_10641#2 NNNNTTNNGGGGGTTC--AAAGNGGNCCNCTAGGA--GNNGGC-AAGGACCACNNNT--C 81 consensus_10641#0 A--CCTCGGGTGCTTCC--AAGGAGGCCAACAAGGAGGTCGCC-AAGGACAACAACGC-C 168 consensus_10641#4 ---------------------------CANAGGNAGTNTNNCCCAAGGNCAANAACGGCC 33 consensus_10641#3 CTTGGAAATANACNTCT--AGAGCAGATGGTNNTGATANTGTC-AANGTCTCTNACAG-C 81 * ** * * * consensus_10641#1 CACCTTGGAACTC-GTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGC 203 consensus_10641#2 TNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCT-TCAAGGNCAANGGCANCGAGC 140 consensus_10641#0 AGCCTTGGAACTC-GTGCCGAGGCCGGCATTGACGCCC-TCAAGGACAAGGGCAACGAGC 226 consensus_10641#4 AGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCC-TCAAGGNCAAGGNCAGCGAGC 92 consensus_10641#3 NAGATTGC-CCTTAGTGGAGAGNACNCCATNATTGGCC-TAAAGGTTGTTGNCCATGAGT 139 *** ** ** ** * *** * * * **** * * *** consensus_10641#1 -ACAAGC-ACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCA 261 consensus_10641#2 -ANAAGC-GNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCA 198 consensus_10641#0 -ACAAGC-ACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCA 284 consensus_10641#4 -ACAAGC-NCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCA 150 consensus_10641#3 GATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGG 199 * ** ** * * **** * ** * *** *** consensus_10641#1 CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGA 321 consensus_10641#2 CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGA 258 consensus_10641#0 CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGA 344 consensus_10641#4 CCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANA 210 consensus_10641#3 GNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANA 259 * * ** **** * ** *** ***** ** *** ** **** *** **** * consensus_10641#1 CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 381 consensus_10641#2 CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 318 consensus_10641#0 CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 404 consensus_10641#4 CGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTT 270 consensus_10641#3 CGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 319 *** ******* ******* ******** ***** ************************* consensus_10641#1 CACTTCG-TCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGA-T 439 consensus_10641#2 CNCTTNG-TCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGA-T 376 consensus_10641#0 CACTTCG-TCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGA-T 462 consensus_10641#4 CACTTCG-TCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGA-T 328 consensus_10641#3 CACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCT 379 * *** * ** ** ******** ********** ***************** ** * consensus_10641#1 TGATAACAAAAAAAAAAAAA- 459 consensus_10641#2 TGCTACCAAAAAAAAAAAAA- 396 consensus_10641#0 TGATACCAAAAAAAAAAAAA- 482 consensus_10641#4 TGATAACAAAAAAAAAAAAAA 349 consensus_10641#3 TCATANCAAAAAAAAA----- 395 * ** ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||