These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCTGAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGAGATTGTTAGCAAGTGGGACTGGTATTCCAGTGTCAACCCTTCAACAATCTTAAAAGGAAAGCTACTGCTATTGGAAGTGTACTCCACAAGNGGGTTATTGCCCAGATATTCAGTTAAGCAATGGCTAATCAATCCGTCGTTTAGGGAAGCCTTAAGCCCTACCGTCCCTAGAAGTTAATGTTTTGGGGCCACAGGTTNGGGAAGCCCACTNGGGAAAAATNGCT] [+] EMBL C28363 [CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCTGAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGAGATTGTTAGCAAGTGGGACTGGTATTCCAGTGTCAACCCTTCAACAATCTTAAAAGGAAAGCTACTGCTATTGGAAGTGTACTCCACAAGNGGGTTATTGCCCAGATATTCAGTTAAGCAATGGCTAATCAATCCGTCGTTTAGGGAAGCCTTAAGCCCTACCGTCCCTAGAAGTTAATGTTTTGGGGCCACAGGTTNGGGAAGCCCACTNGGGAAAAATNGCT] consensusID : consensus_1065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [GTACACTTCTGTCGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAGTGGACTGGTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGATGTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCNAATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAAATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAGCTTNANTTCCC] [+] EMBL D42929 [GTACACTTCTGTCGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAGTGGACTGGTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGATGTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCNAATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAAATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAGCTTNANTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1065#0 CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCT 60 consensus_1065#1 ------------------------------------------------------------ consensus_1065#0 GAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTA 120 consensus_1065#1 -------------------------------------------GTACACTTCTGTCGCTA 17 * ********** **** consensus_1065#0 CAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCA 180 consensus_1065#1 CAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCA 77 ************************************************************ consensus_1065#0 ATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGA-GATTGTTAGCAAGTGGGACTG 239 consensus_1065#1 ATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAG--TGGACTG 135 **************** ********************* **** ****** ****** consensus_1065#0 GTATTCCAGTGTCAACCC-TTCAACAATCTTAAAAGGAAA-GCTACTGCTATTGGAAG-T 296 consensus_1065#1 GTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGAT 195 *************** ** *********** ********* ***************** * consensus_1065#0 GTACTCCACAA-GNGGGTTATTGCCCAGA--TATT-CAGTTAAG--CAATGGCTAATCAA 350 consensus_1065#1 GTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCN 255 *********** * ********* *** * **** **** * ** ******** consensus_1065#0 ---TCCGTCGTT-TAGGGA---AGCCT--TAAGCCCTA--CCGTCCCTAG--AAGTT--A 395 consensus_1065#1 AATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAA 315 ******** ***** **** * **** ******* *** * * consensus_1065#0 ATGTTT--TGGGGCC--ACAGGTTN----GGGAAGCCCA--CTNGGGAAAAATNGCT--- 442 consensus_1065#1 ATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAG 375 ****** ***** * *** ** * * **** ****** *** ** consensus_1065#0 ----------- consensus_1065#1 CTTNANTTCCC 386 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||