cluster # 10651

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Oryza sativa
cluster # 10651 cluster # 10651 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10651#0 length = 552 sequences # 3

consensus_10651#1 length = 428 sequences # 2
consensus_10651#2 length = 328 sequences # 2

consensusID : consensus_10651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 552
fasta sequence

                              [CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC-GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAATTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAAAAAACATAAAAA]

[+] EMBL CF279060             [CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAA TTG ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAAAA          ]
[-] EMBL CF279061             [                                                                                                              CTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAAAATTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACT                                                   ]
[+] EMBL AU165037             [                                                                                                                                                                                                                                                                               agaggaggcAGTTCGAGTAGGCCAATTGTGGTCATCTTATTATCCGTTGGTGGGCTTAGATCAGACAAATTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAT GTGGGTCCCATGTCAAACATAAAAA]




>consensus_10651#0
CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTC
GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATT
TGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATC
ATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT
CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG
GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAATTTTTAATTTTAAATATTACT
TTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACT
ACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGG
AAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAA
AAAACATAAAAA

consensusID : consensus_10651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence

                              [CTCCCTTTCGCCTA-CACG-AAATT-ACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTG-ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA]

[+] EMBL CF334569             [CTCCCTTTCGCCTA CACG AAATT ACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTG ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAA ]
[-] EMBL CF334570             [          CCTACCACGAAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA]




>consensus_10651#1
CTCCCTTTCGCCTACACGAAATTACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGG
CCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCA
TGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGA
GTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTT
TTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGATTGCTGTTTGTATTTC
AATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGT
GGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATT
AGAAAAAA

consensusID : consensus_10651#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 328
fasta sequence

                              [CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTATTCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG]

[+] EMBL CF337999             [CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTATTCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG]
[-] EMBL CF337998             [ TCCCTTTCGCCTACCACGAAATTCACTGGGTTTGGACTTGGTTTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTTTGAGTATTTTTTTTCAGGAACAAGGTTTTGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTTTTTGCCAAACTGGTTTCCCGACGGGGATGAAAAAAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATTTTATTATCCGTTGATTGGCTTATCGCAGCCAATTTTTTAATTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]




>consensus_10651#2
CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAAC
GGCCTTTCACTCCAATTGGTTATTTTTCTGAGTATTCTTTTTCAGGAACAAGGTTTCGGA
ACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGA
TGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCT
TATCGCAGACAATTTTTTAATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACCACTGTCATGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10651#0      CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTC 60
consensus_10651#1      -----CTCCCTTTCGCCTAC-ACGAAATT-ACTGGGTTTCGACTTCGTCTCCTCATCGTC 53
consensus_10651#2      -----CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTC 55
                            *************** ******** ******************************

consensus_10651#0      GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATT 120
consensus_10651#1      GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGG---------------------- 91
consensus_10651#2      GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTAT-------------------- 95
                       *************************************                       

consensus_10651#0      TGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATC 180
consensus_10651#1      ------------------------------------------------------------
consensus_10651#2      ------------------------------------------------------------
                                                                                   

consensus_10651#0      ATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 240
consensus_10651#1      ------------AACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 139
consensus_10651#2      -TCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 154
                                   ************************************************

consensus_10651#0      CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 300
consensus_10651#1      CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 199
consensus_10651#2      CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 214
                       ************************************************************

consensus_10651#0      GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAATTTTTAATTTTAAATATTACT 360
consensus_10651#1      GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACT 259
consensus_10651#2      GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAA 274
                       ************************************** ****************  *  

consensus_10651#0      TTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACT 420
consensus_10651#1      TTTGAGTTAATTTTTGAGAATTTG-ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACT 318
consensus_10651#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG------ 328
                           *   **      * **     *           *   ** * *  *          

consensus_10651#0      ACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGG 480
consensus_10651#1      ACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGG 378
consensus_10651#2      ------------------------------------------------------------
                                                                                   

consensus_10651#0      AAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAA 540
consensus_10651#1      AAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA---------- 428
consensus_10651#2      ------------------------------------------------------------
                                                                                   

consensus_10651#0      AAAACATAAAAA 552
consensus_10651#1      ------------
consensus_10651#2      ------------