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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 888 fasta sequence
[CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA-TGTA-CA-CAAGCTT-GT-CATCAATTGCTGTTGCATTCTCTGTGGCG-TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA-CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG-CAAGAGACTTGTAATGAAGCGGC-ATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAA-CTGGACTGGAAA-CTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATG-ACCAGATCAA-CATTTTCTCACGGTAAAAAAAAAA]
[+] EMBL CF334625 [CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAG ]
[+] EMBL AK103246 [ TCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGAAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGG ]
[-] EMBL CF334624 [ GTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTTTTCCATTTGTAGAA CTGGACTGGAAA CTTGAAAGCATAGATTACATTGCAGTAaaaaaa ]
[+] EMBL BI800214 [ ccTGCCTCCCCGGATTGTACCACCAAGCTTGGTCCATCAATTCCTGTTCCATTCTCT TGGCGTTCCATTATTC GTCAGA TTGTTCTTCAAGATCACGAA CCAAATACCAGAGTCCATAACAACCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGGC ATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACCTGGACTGGAAACCTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATG ACCAGATCAA CATTTTCTCACGGTAAAAAA ]
[+] EMBL BI803734 [ CATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCCAAGAGACTTGTAATGAAGCGGC ATTGGTTCACAAATCCATGAC ACCATGACTCCATTCTGCTTCTTCCATTTGTAGAA CTGGACTGGAAACCTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATGCACCAGATCAACCATTTTCTCACGGTAAAAAAAAAA]
consensusID : consensus_10652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[GCCTCCTGTGCTCGCCTGTCGAAGGGCCGGAGATGAACAAGTTCCCGTGATGTCCGTGGCCTGCTGGGACTGTTGCCATTGTCTGGGAGAAATAGGACGTAGCCAGACAATGGCTGTGCTGCTCCGGATGTACACAAGCTTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATACAGAGTCCATAACAACCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCCAAAAAAAAAA]
[+] EMBL BI802027 [GCCTCCTGTGCTCGCCTGTCGAAGGGCCGGAGATGAACAAGTTCCCGTGATGTCCGTGGCCTGCTGGGACTGTTGCCATTGTCTGGGAGAAATAGGACGTAGCCAGACAATGGCTGTGCTGCTCCGGATGTACACAAGCTTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATACAGAGTCCATAACAACCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCCAAAAAAAAAA]
consensusID : consensus_10652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[GGCGGACGCGTGGCGGACGCGTGGGTCCGTGGCTCTGGACTGTTGCCACTTGTGCTGGGAGAAATAGGACGTAGCAGACAATGGCTGCTGCTGCTCCGGATGTACACAAGCATTGTCATCAATTGCTGTTGCATTCTCTTGGCGTGCATTATTCGGTCAGAGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTTTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAAACCAGACTTCTGCAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAAAAA]
[+] EMBL BI800957 [GGCGGACGCGTGGCGGACGCGTGGGTCCGTGGCTCTGGACTGTTGCCACTTGTGCTGGGAGAAATAGGACGTAGCAGACAATGGCTGCTGCTGCTCCGGATGTACACAAGCATTGTCATCAATTGCTGTTGCATTCTCTTGGCGTGCATTATTCGGTCAGAGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTTTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAAACCAGACTTCTGCAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10652#0 CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCG 60
consensus_10652#1 ------------------------------------------------------------
consensus_10652#2 ------------------------------------------------------------
consensus_10652#0 ATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCC 120
consensus_10652#1 ------------------------------------------------------------
consensus_10652#2 ------------------------------------------------------------
consensus_10652#0 TACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGC 180
consensus_10652#1 ------------------------------------------------------------
consensus_10652#2 ------------------------------------------------------------
consensus_10652#0 CGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCG 240
consensus_10652#1 --------------------------------------------GCCTCCTGTGCTCGC- 15
consensus_10652#2 ------------------------------------------------------------
consensus_10652#0 CTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGC-TGCTGG-ACTGT 298
consensus_10652#1 CTGTCGAAGGGC-CGGAGATGAACAAGTTC-CCGTGATGTCCGTGGCCTGCTGGGACTGT 73
consensus_10652#2 -----GGCGGACGCGT-GGCGGACG-------CGTGG-GTCCGTGGC--TCTGG-ACTGT 43
* ** * ** * * ** **** ********* **** *****
consensus_10652#0 TGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTG-TGCTGCTCCGGATG 357
consensus_10652#1 TG-CCATTGT-CTGGGAGAAATAGGACGTAGCCAGACAATGGCTG-TGCTGCTCCGGATG 130
consensus_10652#2 TGCCACTTGTGCTGGGAGAAATAGGACGTAG-CAGACAATGGCTGCTGCTGCTCCGGATG 102
** * **** ******************** * *********** **************
consensus_10652#0 TACACAAGC-TTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCA-TTATTCGGTCAG 415
consensus_10652#1 TACACAAGC-TTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAG 189
consensus_10652#2 TACACAAGCATTGTCATCAATTGCTGTTGCATTCTCT-TGGCGTGCA-TTATTCGGTCAG 160
********* *************************** ********* ************
consensus_10652#0 AGTTGTTCTTCAAGATCACGAAGCA-AAATACA-GAGTCCATAACAAGCCATGAACTATT 473
consensus_10652#1 AGTTGTTCTTCAAGATCACGAAGCA-AAATACA-GAGTCCATAACAA-CCATGAACTATT 246
consensus_10652#2 AGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATT 220
*********** ************ ******* ************* ************
consensus_10652#0 GGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGG-TTATAGCTACAACAA 532
consensus_10652#1 GGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGG-TTATAGCTACAACAA 305
consensus_10652#2 GGAGGTGGTTCGT-TTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAA 279
************* ****************************** ***************
consensus_10652#0 -CTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 591
consensus_10652#1 -CCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 364
consensus_10652#2 ACCAGACTTCTGCAAA-TATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 338
* ************ *******************************************
consensus_10652#0 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 651
consensus_10652#1 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 424
consensus_10652#2 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 398
************************************************************
consensus_10652#0 CAAGAGACTTGTAATGAAGCGGCA-TTGGTTCACAAATCCATGACAACCATGACTCCATT 710
consensus_10652#1 CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATT 484
consensus_10652#2 CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAA 458
************************ *********************************
consensus_10652#0 CTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTA 770
consensus_10652#1 CTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTA 544
consensus_10652#2 AAA--------------------------------------------------------- 461
consensus_10652#0 TCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCC 830
consensus_10652#1 TCGTCATGTTGTTTCGCCCCAAAAAAAAAA------------------------------ 574
consensus_10652#2 ------------------------------------------------------------
consensus_10652#0 TGGTTCTAAATTGCTCTGTTCATGACCAGATCAACATTTTCTCACGGTAAAAAAAAAA 888
consensus_10652#1 ----------------------------------------------------------
consensus_10652#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||