cluster # 10654

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Oryza sativa
cluster # 10654 cluster # 10654 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10654#0 length = 611 sequences # 6

consensus_10654#1 length = 584 sequences # 1

consensusID : consensus_10654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 611
fasta sequence

                              [GATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCT-GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT-CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC-TGCTA-CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGT-GTGAGACAGATCTTTTGTTTTCAGCCATCAAACTT-GTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAACTAACCAAAGGTTGGAGCACTTGTGCTTGTGGGAAGTGGTACTGATTTGTGCTGAAACTTGAAGTAATGT]

[+] EMBL CF334666             [GATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCT GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC TGCTA CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGT GTGAGACAGATCTTTTGTTTTCAGCCATCAAACTT GTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATACTTCTGAACTTCTGAACTAACCAAAGGTTGGAGCACTTGTGCTTGTGGGAAGTGGTACTGATTTGTGCTGAAACTTGAAGTAATGT]
[+] EMBL AK111015             [ ATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCT GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC TGCTA CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGT GTGAGACAGATCTTTTGTTTTCAGCCATCAAACTT GTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAACTAACCAAAGGTTGG                                                       ]
[+] EMBL AU030057             [    cgCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGTCG  T GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCCAAG TGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC TGCTATCAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGT GTGAGACAGATCTTTTGTTTTCAGCCATCAAACTT GTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAACTAACCAAAGGTTGGAGCAaaaa                                               ]
[+] EMBL AU030056             [               CCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCT GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTTGCTA CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGGAAGT GTGAGACAGATCTTTNGTTTCAAGCCATC AACTT GGTAAATTTTGGTGGTTCCNGA                                                                                                                                                                                                             ]
[+] EMBL CB000922             [                   GATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGATGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC TGCTA CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGT GTGAGACAGATCTTTTGTTTTCAGCCATCAAACTT GTTAATTTGTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTGTTTGCACTTGGCAAGTGTTTAGCTCAGCATTGCCCCTGCTGATGTGTATTGTTGATGATGTACTGATGGTATGTCCATCGGTTGTACTGCATATCTCTG                                                                                ]
[+] EMBL OSS10992A            [                   GATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCT GCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCT CCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACANGNCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGC TGCTA CAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTNCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGGTGAGGCAGATCTTTTGTTTTCAGCCATCAAACTTNGTTAATTTTTG                                                                                                                                                                                                                        ]




>consensus_10654#0
GATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGC
CGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGC
CACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGA
TCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTA
TTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGAT
TGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGAT
CTTTTGTTTTCAGCCATCAAACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGA
ATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTA
TTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGA
ACTAACCAAAGGTTGGAGCACTTGTGCTTGTGGGAAGTGGTACTGATTTGTGCTGAAACT
TGAAGTAATGT

consensusID : consensus_10654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [GCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGATCTTTTGTTTTCAGCCATCANACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAAACTAACCANAGGTGGAGCACTTGTGCTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA754358             [GCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGATCTTTTGTTTTCAGCCATCANACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAAACTAACCANAGGTGGAGCACTTGTGCTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_10654#1
GCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGCGCCTTCCACGGTCCTCCGC
GCGACATCCACGAGCCTCCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCT
CGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGAC
TACTCCACGCGGCGGCCCGCTGCTACAGCTATTGCACGTTGTGCCATGGCTGATTAGTTG
CCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGA
TTGCTTTTGCATGTGTAAGTGTGAGACAGATCTTTTGTTTTCAGCCATCANACTTGTTAA
TTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTG
TTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCA
TCGTTTGTACTGCATATTTCTGAACTTCTGAAACTAACCANAGGTGGAGCACTTGTGCTT
GTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10654#0      GATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGC 60
consensus_10654#1      -----------------------------GCCAGGGGGCGGCGACGGCGAGGCAGCCAGC 31
                                                    *******************************

consensus_10654#0      CGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGC 120
consensus_10654#1      CGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGC 91
                       ************************************************************

consensus_10654#0      CACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGA 180
consensus_10654#1      CACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGA 151
                       ************************************************************

consensus_10654#0      TCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTA 240
consensus_10654#1      TCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTA 211
                       ************************************************************

consensus_10654#0      TTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGAT 300
consensus_10654#1      TTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGAT 271
                       ************************************************************

consensus_10654#0      TGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGAT 360
consensus_10654#1      TGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGAT 331
                       ************************************************************

consensus_10654#0      CTTTTGTTTTCAGCCATCAAACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGA 420
consensus_10654#1      CTTTTGTTTTCAGCCATCANACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGA 391
                       ******************* ****************************************

consensus_10654#0      ATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTA 480
consensus_10654#1      ATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTA 451
                       ************************************************************

consensus_10654#0      TTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGA 540
consensus_10654#1      TTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGA 511
                       ************************************************************

consensus_10654#0      A-CTAACCAAAGGTTGGAGCACTTGTGCTTGTGGGAAGTGGTACTGATTTGTGCTGAAAC 599
consensus_10654#1      AACTAACCANAGGT-GGAGCACTTGTGCTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNN 570
                       * ******* **** ******************                           

consensus_10654#0      TTGAAGTAATGT-- 611
consensus_10654#1      NNNNNNNNNNNNNN 584