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Oryza sativa
cluster # 10655 cluster # 10655       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10655#0 length = 2332 sequences # 4  
consensus_10655#1 length = 720 sequences # 1  
consensus_10655#2 length = 347 sequences # 1  
consensus_10655#3 length = 246 sequences # 1  

consensusID : consensus_10655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2332
fasta sequence
                              [TCTCTCGCTCTCTCCTCTTTCCTTGCGACGGGCGACAGCCGC------GTCTTTCCCTCCACCTGGCTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCCCGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCCCCGACCCGAGGATGCACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGCCGGACGCGGGTGCGCAGCGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATGCGC-AAGGCAGCAGGTCGCCGGTGGGGACGCGCGGAGGCAGCGTCGACGCGCAGCGTGCGGGCGCAGCAGCAGCTAGCAACAGCCCAGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACT----CT--ACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGTATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGAATGAGAAACAGAGCCTTCTATTTAATAGTTTTTTATTTACTGATAAACTTGCAAGAGAGAAGAAAACAACATTGTTTAACTACTTTACAAACCCAATTGATGAGAGCACAAACCAACCAACAAGATTCGAATAGATTTTGATCCTAATGAAATTCTTTTCAGCACGATGAATGACAATGGAGGATATGTTGGTGGATGCAGTTACATTTGTTTCTTTGGTTTAAGATTTG-TTTCCGTTGATTTGTCACTAATTTGCTACTTTGCATATATAGCTGGCTGCTCACTTGACTTTTGGCTAAGGCCTAAAAGAATGCACTTTGTGCTGGCAAAGTACTCCTTTTTTTTTTCTTTTCTATCATGTGAACATTTAATTTGACTTGTAAGAGGAAGGGGAAAAGAAGGGAGTAAGAGGCAGTTTGGTCTCAGAAGAATGCACTTTTTTCTTTACCCTGCCTCTTACGGTTTGTGGCTGCAATGGCTAGCAGTGTATCTGGTTCAAGAAGTCTTATCGACGTTGTTCCATTCTTCTGATGACCACACTGGATCTGGTCATTTGTTGCATGATAGAGGATCCATCATGGTGTATTCATGTAGTCATTATCTCCATGCTTTCCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACTGGTTGGTGCTCTTGCAGGTGAGATTGAAGATATAAAATTGGTCAGGGCTCTGGTAAGCTTTGTAATGGAGAAATTTTGCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGAAAAGGTAGAGATGAAAACATGATGGCTAGAGCTACAGTGTGGACCAATGATGGCACTTGGAGCTGGGTAAGGACCATTGATGATACTAGAATTTAGAGATGTGTTTGCGCATGCTATACTCTACATGTTTTATATTTCCATTGCCTTTTTTTTCCTTTTCTTTTTTCATTTCTTCTTGAAGGTATTGGGTCAGAGAGAGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCACTTGGTTATTCAATCTAGGTCCAGAGTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTAATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGATGCAGAGTATAAGAAATTCAGAATAAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAGTGTGCCCTTTATGACACCTGTAAAACCTATTAGCTTGAGGCACACATTATTTTTGTTACAAGTATAATGGTTATGCCCATGAATAAATGGAAATGGTGTGAATTGAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK064897             [TCTCTCGCTCTCTCCTCTTTCCTTGCGACGGGCGACAGCCGCCGCCCGGTCTTTCCCTCCACCTGGCTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCCTGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCCCCGACCCGAGGATGCACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGCCGGACGCGGGTGCGCAGCGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATGCGC AAGGCAGCAGGTCGCCGGTGCGGACGCGCGGAGGCAGCGTCGACGCGCAGCGTGCGGGCGCAGCAGCAGCTAGCAACAGCCCAGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACT    CT  ACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGTATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGAATGAGAAACAGAGCCTTCTATTTAATAGTTTTTTATTTACTGATAAACTTGCAAGAGAGAAGAAAACAACATTGTTTAACTACTTTACAAACCCAATTGATGAGAGCACAAACCAACCAACAAGATTCGAATAGATTTTGATCCTAATGAAATTCTTTTCAGCACGATGAATGACAATGGAGGATATGTTGGTGGATGCAGTTACATTTGTTTCTTTGGTTTAAGATTTG TTTCCGTTGATTTGTCACTAATTTGCTACTTTGCATATATAGCTGGCTGCTCACTTGACTTTTGGCTAAGGCCTAAAAGAATGCACTTTGTGCTGGCAAAGTACTCCTTTTTTTTTTCTTTTCTATCATGTGAACATTTAATTTGACTTGTAAGAGGAAGGGGAAAAGAAGGGAGTAAGAGGCAGTTTGGTCTCAGAAGAATGCACTTTTTTCTTTACCCTGCCTCTTACGGTTTGTGGCTGCAATGGCTAGCAGTGTATCTGGTTCAAGAAGTCTTATCGACGTTGTTCCATTCTTCTGATGACCACACTGGATCTGGTCATTTGTTGCATGATAGAGGATCCATCATGGTGTATTCATGTAGTCATTATCTCCATGCTTTCCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACTGGTTGGTGCTCTTGCAGGTGAGATTGAAGATATAAAATTGGTCAGGGCTCTGGTAAGCTTTGTAATGGAGAAATTTTGCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGAAAAGGTAGAGATGAAAACATGATGGCTAGAGCTACAGTGTGGACCAATGATGGCACTTGGAGCTGGGTAAGGACCATTGATGATACTAGAATTTAGAGATGTGTTTGCGCATGCTATACTCTACATGTTTTATATTTCCATTGCCTTTTTTTTCCTTTTCTTTTTTCATTTCTTCTTGAAGGTATTGGGTCAGAGAGAGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCACTTGGTTATTCAATCTAGGTCCAGAGTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTAATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGATGCAGAGTATAAGAAATTCAGAATAAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAGTGTGCCCTTTATGACACCTGTAAAACCTATTAGCTTGAGGCACACATTATTTTTGTTACAAGTATAATGGTTATGCCCATGAATAAATGGAAATGGTGTGAAT                                           ]
[+] EMBL AK107055             [     CGCTCTCTCCTCTTTCCTTGCGACGGGCGACAGCCGC      GTCTTTCCCTCCACCTGGCTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCCCGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCCCCGACCCGAGGATGCACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGCCGGACGCGGGTGCGCAGCGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATGCGC AAGGCAGCAGGTCGCCGGTGGGGACGCGCGGAGGCAGCGTCGACGCGCAGCGTGCGGGCGCAGCAGCAGCTAGCAACAGCCCAGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACTGCTACTCCACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGCATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGAATGAGAAACAGAGCCTTCTATTTAATAGTTTTTTATTTACTGATAAACTTGCAAGAGAGAAGAAAACAACATTGTTTAACTACTTTACAAACCCAATTGATGAGAGCACAAACCAACCAACAAGATTCGAATAGATTTTGATCCTAATGAAATTCTTTTCAGCACGATGAATGACAATGGAGGATATGTTGGTGGATGCAGTTACATTTGTTTCTTTGGTTTAAGATTTGTTTTCTGTTGATTTGTCACTAATTTGCTACTTTGCATATATAGCTGGCTGCTCACTTGACTTTTGGCTAAGGCCTAAAAGAATGCACTTTGTGCTGGCAAAGTACTCC  TTTTTTTTCTTTTCTATCATGTGAACATTTAATTTGACTTGTAAGAGGAAGGGGAAAAGAAGGGAGTAAGAGGCAGTTTGGTCTCAGAAGAATGCACTTTTTTCTTTACCCTGCCTCTTACGGTTTGTGGCTGCAATGGCTAGCAGTGTATCTGGTTCAAGAAGTCTTGTCGACGTTGTTGCATTCTTCTGATGACCACACTGGATCTGGTCATTTGTTGCATGATAGAGGATCCATCACGGTGTATTCATGTAGTCATTATCTCCATGCTTTCCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACTGGTTGGTGCTCTTGCAGGTGAGATTGAAGATATAAAATTGGTCGGGGCTCTGGTAAGCTTTGTAATGGAGAAATTTTGCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGAAAAGGTAGAGATGAAAACATGGTGGCTAGAGCT  AGTGTGGACCAATGATGGCACTTGGAGCTGGGTAAGGACCATTGATGATACTAGAATTTAGAGATGTGTTTGCACATGCTATACTCTACATGTTTTATATTTCCATTGCC  TTTTTTCCTTTTCTTTTTTCATTTCTTCTTGAAGGTATTGGATCAGAGAGAGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCACTTGGTTATTCAATCTAGGTCCAGAGTTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C73983               [            TCCTCTTTCCTTGCGACGGGCGACA  CGC      GTCTTTCCCTCCACCTGGCTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCCCGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCGCCGACCCGAGGATGCACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGNCGGACGCGGGTGCGCA NGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATG GCAAAGGCAGCAGGTCGCCGGTGGGGACGCGCGGAGGCAGCGTCGACG GGAGTGCG GGGCG AG AGCAGCTAG NACAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF335107             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAGTGTGCCCTTTATGACACCTGTAAAACCTATTAGCTTGAGGCACACATTATTTTTGTTACAAGTATAATGGTTATGCCCATGAATAAATGGAAATGGTGTGAATTGAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10655#0 TCTCTCGCTCTCTCCTCTTTCCTTGCGACGGGCGACAGCCGCGTCTTTCCCTCCACCTGG CTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCC CGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCCCCGACCCGAGGATGC ACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGCC GGACGCGGGTGCGCAGCGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATGCGCAAGGCAGC AGGTCGCCGGTGGGGACGCGCGGAGGCAGCGTCGACGCGCAGCGTGCGGGCGCAGCAGCA GCTAGCAACAGCCCAGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACTCTA CTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGTATTCCCTA TTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGAATGAGAAA CAGAGCCTTCTATTTAATAGTTTTTTATTTACTGATAAACTTGCAAGAGAGAAGAAAACA ACATTGTTTAACTACTTTACAAACCCAATTGATGAGAGCACAAACCAACCAACAAGATTC GAATAGATTTTGATCCTAATGAAATTCTTTTCAGCACGATGAATGACAATGGAGGATATG TTGGTGGATGCAGTTACATTTGTTTCTTTGGTTTAAGATTTGTTTCCGTTGATTTGTCAC TAATTTGCTACTTTGCATATATAGCTGGCTGCTCACTTGACTTTTGGCTAAGGCCTAAAA GAATGCACTTTGTGCTGGCAAAGTACTCCTTTTTTTTTTCTTTTCTATCATGTGAACATT TAATTTGACTTGTAAGAGGAAGGGGAAAAGAAGGGAGTAAGAGGCAGTTTGGTCTCAGAA GAATGCACTTTTTTCTTTACCCTGCCTCTTACGGTTTGTGGCTGCAATGGCTAGCAGTGT ATCTGGTTCAAGAAGTCTTATCGACGTTGTTCCATTCTTCTGATGACCACACTGGATCTG GTCATTTGTTGCATGATAGAGGATCCATCATGGTGTATTCATGTAGTCATTATCTCCATG CTTTCCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACTGGTTGGTGCTCTTGCAG GTGAGATTGAAGATATAAAATTGGTCAGGGCTCTGGTAAGCTTTGTAATGGAGAAATTTT GCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGAAAAGGTAGAGATGAAAA CATGATGGCTAGAGCTACAGTGTGGACCAATGATGGCACTTGGAGCTGGGTAAGGACCAT TGATGATACTAGAATTTAGAGATGTGTTTGCGCATGCTATACTCTACATGTTTTATATTT CCATTGCCTTTTTTTTCCTTTTCTTTTTTCATTTCTTCTTGAAGGTATTGGGTCAGAGAG AGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCACTTGGTTATTCAATCTAG GTCCAGAGTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTAATGGGCCCCGGT GAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGATGCAGAGTATAAGAAATTCAGAA TAAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCCTAACCTCGAGACAT GGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAAT GTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGGA TAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTAT ACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCAC ATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGC TCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGG CCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTG CTAATGCTCATTTTCTGTCTTTTCAGTGTGCCCTTTATGACACCTGTAAAACCTATTAGC TTGAGGCACACATTATTTTTGTTACAAGTATAATGGTTATGCCCATGAATAAATGGAAAT GGTGTGAATTGAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence
                              [GTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTNATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGACGCAGAGTATAAGAAATTCAGAATCAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCAGAAATTCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCGTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGACGACGAGAACATGATGGTGTGAATTGAGGTTAACAATATGATGGTTACAAGAGCTTTTTCTTTGTGATTCTTTAGCCAGCTGATAGGGCGCGCAACGCTCGCGGTAATGTCTAGTATAGTTAAAGCATACATGAAATAAGGTCCTATTAGAAAATTTTCATCATAGCATTCAACCTATAGGCCTCCAATGGTACGTCATTGAAATGCAAGCTAATTCAGG]

[+] EMBL CB096666             [GTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTNATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGACGCAGAGTATAAGAAATTCAGAATCAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCAGAAATTCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCGTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGACGACGAGAACATGATGGTGTGAATTGAGGTTAACAATATGATGGTTACAAGAGCTTTTTCTTTGTGATTCTTTAGCCAGCTGATAGGGCGCGCAACGCTCGCGGTAATGTCTAGTATAGTTAAAGCATACATGAAATAAGGTCCTATTAGAAAATTTTCATCATAGCATTCAACCTATAGGCCTCCAATGGTACGTCATTGAAATGCAAGCTAATTCAGG]


>consensus_10655#1 GTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTNATGGGCCCCGGTGAGTAAA TCGTTGAGTTCTGTACCGTGACTAAAGCGACGCAGAGTATAAGAAATTCAGAATCAAAAA TTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCAGAAATTCCTAACCTCGAGACA TGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGTTGTGTTCTGCTCTTAA TGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCATATTTTCTGCTACTGG ATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTA TACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTATCTGTGACTGTGACCA CATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCGTGAAGACATCGTGAGGAGTG CTCTGAAGATTGTCGACGGACGACGAGAACATGATGGTGTGAATTGAGGTTAACAATATG ATGGTTACAAGAGCTTTTTCTTTGTGATTCTTTAGCCAGCTGATAGGGCGCGCAACGCTC GCGGTAATGTCTAGTATAGTTAAAGCATACATGAAATAAGGTCCTATTAGAAAATTTTCA TCATAGCATTCAACCTATAGGCCTCCAATGGTACGTCATTGAAATGCAAGCTAATTCAGG



consensusID : consensus_10655#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence
                              [AGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACCGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAANTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU183929             [AGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACCGGAGTACAACTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAANTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10655#2 AGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATGTATTGTTACCGAGTTATACG GAGTATTTGTTATTCCATTGGATATACCGGAGTACAACTTATCTGTGACTGTGACCACAT GTGCATAAGTTGGTTTAAAANTTTAAATGGGCTTCCCTGAAGACATCGTGAGGAGTGCTC TGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAGCTCTGCTCTGTCTGAGGCC CTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAATAAGACAACAGTGCTTGCT AATGCTCATTTTCTGTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10655#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence
                              [ACGCGCGGAGGCAGCGTCGACGCGCNGCGTGCGGGCGCAGCAGCAGNTAGCAACAGCCCNGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACTGCTACTCTACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGCATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGANTGNGAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029279             [ACGCGCGGAGGCAGCGTCGACGCGCNGCGTGCGGGCGCAGCAGCAGNTAGCAACAGCCCNGTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACTGCTACTCTACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGCATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGANTGNGAAAAAAAAAAAAAAAAAA]


>consensus_10655#3 ACGCGCGGAGGCAGCGTCGACGCGCNGCGTGCGGGCGCAGCAGCAGNTAGCAACAGCCCN GTGCACGGGCGCATGGTCGCGTCCTGGTCTGCTACTGCTACTGCTACTCTACTCAAGTGC TCACATGCTATTTCTAATCAGCTAATGGCACTAATAAGTGAGCATTCCCTATTTCTCTGT AGCATTTAGGTAGACTCTGGACTCTAATCTATTTATCTTTTGANTGNGAAAAAAAAAAAA AAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10655#0      TCTCTCGCTCTCTCCTCTTTCCTTGCGACGGGCGACAGCCGCGTCTTTCCCTCCACCTGG 60
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      -------------------GTTCGGAATCTGAACTACACCTTATCTTGGCTGTATAATTN 41
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CTTGCTTCTCCTCGTCGGCGATGATCTCTCCCACACCACAACACGCCATCCTCTGCTTCC 120
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGACGCAGAGTATA 101
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CGCTGTCTCATCGCCCCTCTCCCACTCCGTCGCAGCGTCGCTGCCCCGACCCGAGGATGC 180
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      AGAAATTCAGAATCAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAATTCAGA 161
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      ACCACCTTCAGATCTGGCGGTGGCTAGGGTTTGGCTTGGAGTGGTGGCTTGCAGCAGGCC 240
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      AATTCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGA 221
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GGACGCGGGTGCGCAGCGGCGGTGCAGCAGCTGGCGCAGTCGCAGCATGCGCAAGGCAGC 300
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      GGTTGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATT 281
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      AGGTCGCCGGTGGGGACGCGCGGAGGCAGCGTCGACGCGCAGCGTGCGG-GCGCAGCAGC 359
consensus_10655#3      ---------------ACGCGCGGAGGCAGCGTCGACGCGCNGCGTGCGG-GCGCAGCAGC 44
consensus_10655#1      CCATATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAA 341
consensus_10655#2      -----------------------AGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAA 37
                                              ****     *   *  *  *   ***   * *  *  

consensus_10655#0      AGCTAGCAACAGCCCAGTGCACGGGCGCATGGTCGCGTCCT--GGTCTGC-----TACTG 412
consensus_10655#3      AGNTAGCAACAGCCCNGTGCACGGGCGCATGGTCGCGTCCT--GGTCTGC-----TACTG 97
consensus_10655#1      ATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATAC-GGAGTACAA 400
consensus_10655#2      ATGTATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACCGGAGTACAA 97
                       *  **     * *    *  ****     * **     * *  * * * *     ***  

consensus_10655#0      CTA--CT------CTACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGG-CACTAA 463
consensus_10655#3      CTA--CTGCTACTCTACTCAAGTGCTCACATGCTATTTCTAATCAGCTAATGG-CACTAA 154
consensus_10655#1      CTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCG 460
consensus_10655#2      CTTATCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAANTTTAAATGGGCTTCCC 157
                       **   **       *   **  **  ** * * *  **  **      ***** *     

consensus_10655#0      TAAGTGAGTATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTT 523
consensus_10655#3      TAAGTGAGCATTCCCTATTTCTCTGTAGCATTTAGGTAGACTCTGGACTCTAATCTATTT 214
consensus_10655#1      TGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGACGACGAGAACATGATGGTGT 520
consensus_10655#2      TGAAGACATCGTGAGGAGTGCTCTGAAGATTGTCGACGG-CGACGAGAACATGATTCT-T 215
                       * *        *    * * ***** **  * * *   * *   *    *       * *

consensus_10655#0      ATCTTTTGAATGAGAAACAGAGCCTTCTATTTAATAGTTTTTTATTTACTGATAAACTTG 583
consensus_10655#3      ATCTTTTGANTGNGAAAAAAAAA-----AAAAAAAAA----------------------- 246
consensus_10655#1      GAATTGAGGTTAACAATATGATGGT-TACAAGAGCTTTTTCTTTGTGATTCTTTAGCCAG 579
consensus_10655#2      GAAAAGCTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCAT 275
                                           *                                       

consensus_10655#0      CAAGAGAGAAGAAAACAACATTGTTTAACTACTTTACAAACCCAATTGATGAGAGCACAA 643
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      CTG--ATAGGGCGCGCAACGCTCGCGGTAATGTCTAGTATAGTTAAAGCATACATGAAAT 637
consensus_10655#2      TTGTAATAAGACA-ACAGTGCTTGC--TAATGCTCATTTT--CTGTCTTTTCAAAAAAAA 330
                                                                                   

consensus_10655#0      ACCAACCAACAAGATTCGAATAGATTTTGATCCTAATGAAATTCTTTTCAGCACGATGAA 703
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      AAGGTCCTATTAGAAAATTTTCATCATAGCATTCAACCTATAGGCCTCCAATGGTACGTC 697
consensus_10655#2      AAAAAAAAAAAAAAAAA------------------------------------------- 347
                                                                                   

consensus_10655#0      TGACAATGGAGGATATGTTGGTGGATGCAGTTACATTTGTTTCTTTGGTTTAAGATTTGT 763
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ATTGAAATGCAAGCTAATTCAGG------------------------------------- 720
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TTCCGTTGATTTGTCACTAATTTGCTACTTTGCATATATAGCTGGCTGCTCACTTGACTT 823
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TTGGCTAAGGCCTAAAAGAATGCACTTTGTGCTGGCAAAGTACTCCTTTTTTTTTTCTTT 883
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TCTATCATGTGAACATTTAATTTGACTTGTAAGAGGAAGGGGAAAAGAAGGGAGTAAGAG 943
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GCAGTTTGGTCTCAGAAGAATGCACTTTTTTCTTTACCCTGCCTCTTACGGTTTGTGGCT 1003
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GCAATGGCTAGCAGTGTATCTGGTTCAAGAAGTCTTATCGACGTTGTTCCATTCTTCTGA 1063
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TGACCACACTGGATCTGGTCATTTGTTGCATGATAGAGGATCCATCATGGTGTATTCATG 1123
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TAGTCATTATCTCCATGCTTTCCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACT 1183
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GGTTGGTGCTCTTGCAGGTGAGATTGAAGATATAAAATTGGTCAGGGCTCTGGTAAGCTT 1243
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TGTAATGGAGAAATTTTGCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGA 1303
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      AAAGGTAGAGATGAAAACATGATGGCTAGAGCTACAGTGTGGACCAATGATGGCACTTGG 1363
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      AGCTGGGTAAGGACCATTGATGATACTAGAATTTAGAGATGTGTTTGCGCATGCTATACT 1423
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CTACATGTTTTATATTTCCATTGCCTTTTTTTTCCTTTTCTTTTTTCATTTCTTCTTGAA 1483
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GGTATTGGGTCAGAGAGAGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCAC 1543
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TTGGTTATTCAATCTAGGTCCAGAGTTCGGAATCTGAACTACACCTTATCTTGGCTGTAT 1603
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      AATTAATGGGCCCCGGTGAGTAAATCGTTGAGTTCTGTACCGTGACTAAAGCGATGCAGA 1663
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GTATAAGAAATTCAGAATAAAAAATTCAGAAATTCCAGTCATAAATTCAGAATCAGAAAT 1723
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TCCTAACCTCGAGACATGGTCAAAACTAATTAACAAGTTTTAAGGAATCAGTGTTGAGGT 1783
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TGTGTTCTGCTCTTAATGTTTGTTTTAATCCATTTTTGCAGTACCTGCGTGACTATTCCA 1843
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TATTTTCTGCTACTGGATAGAGGCCTTTGCAGAGTACCTCCGTCGGTATGGAAGAAAATG 1903
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TATTGTTACCGAGTTATACGGAGTATTTGTTATTCCATTGGATATACGGAGTACAACTTA 1963
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TCTGTGACTGTGACCACATGTGCATAAGTTGGTTTAAAACTTTAAATGGGCTTCCCTGAA 2023
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      GACATCGTGAGGAGTGCTCTGAAGATTGTCGACGGCGACGAGAACATGATTCTTGAAAAG 2083
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CTCTGCTCTGTCTGAGGCCCTATGGTCGATATGAACTGTAAATTAAATCCCCATTTGTAA 2143
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      TAAGACAACAGTGCTTGCTAATGCTCATTTTCTGTCTTTTCAGTGTGCCCTTTATGACAC 2203
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CTGTAAAACCTATTAGCTTGAGGCACACATTATTTTTGTTACAAGTATAATGGTTATGCC 2263
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      CATGAATAAATGGAAATGGTGTGAATTGAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA 2323
consensus_10655#3      ------------------------------------------------------------
consensus_10655#1      ------------------------------------------------------------
consensus_10655#2      ------------------------------------------------------------
                                                                                   

consensus_10655#0      AAAAAAAAA 2332
consensus_10655#3      ---------
consensus_10655#1      ---------
consensus_10655#2      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)