These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACCAAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGGTGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCTCCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCGCCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCCCTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCATTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC] [+] EMBL CB621449 [ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACCAAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGGTGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCTCCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCGCCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCCCTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCATTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC] consensusID : consensus_1066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTGCATCCCTATACACCACCAC] [-] EMBL CF298127 [ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTGCATCCCTATACACCACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1066#0 ------------------------------------------------------------ consensus_1066#1 ATTCGGTTCGTTACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1066#0 --------------ACAACTCTGATTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTA 46 consensus_1066#1 TTTTTTTATTATTAATTTTCTTTTTTCAGTGATGAAGAGAACTTCACTTCTAAAAGAGTA 120 * * ************************************ consensus_1066#0 TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCA 106 consensus_1066#1 TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCA 180 ************************************************************ consensus_1066#0 GTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATACC 166 consensus_1066#1 GTGCTCCATCCACAATTGCATCCCTATACACCACCAC----------------------- 217 ***************** ****** ************ consensus_1066#0 AAAAAAGAGAGGTAAGTCGCGTCGACGAACAGTCTTTTCCTTGACCTCACACCCCACAGG 226 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TGTTCGCCATTTCGCCGCCCCCACCACCGCGCGCCGCCGCCGCCGCCATGGCCTCCATCT 286 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CCGCCGCCTCCCCCGTCGCTGGGAAGGCCGCCGCCTTCGCCCACAAAAACGAGCTCGCCG 346 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CCGCCGCCGTGGCGCCGTCGCAGCAGCAGCTGCAACGGAGGGTGAGTGGGAGGAGGGCCC 406 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 CTTCGGGGAGGGTCCGCGCCGTCGCCACGCCCGCCCGCGCCCGCAGGGCCCCGATGTCCA 466 consensus_1066#1 ------------------------------------------------------------ consensus_1066#0 TTGGCTCGGTGAAGAGCGCCATGACGATGACAGAGAAGATCC 508 consensus_1066#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||