These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 738 fasta sequence [CGGCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG-AGGGAGGCGGAGGCGGC-AGGGGAGGCGG-AGTGGTGGAGGGCGTGCCGGAGAGG-TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG-CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA-TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT-TAATGATCCTTATGGCCAGCACACACACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU091960 [CGGCAGCTCCCCCGCGCGCTCGC GCGGGGGCCCTCTCCCCCGCGTCGC GGTGCTGGCCGTGACCCCCGCGCCGTCCTNCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG AGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACT ] [+] EMBL CB967444 [ GCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG AGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTCGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAACTGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTCGTAGATATGCAAGACATTCTCGCAAAGTCTATTGATCCTTATGGCCAGCACACACA ] [+] EMBL CB964638 [ GCAGCTCCCCCGCGCGCTCGCGGCGGGTGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGGAAGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTCGCAGTTTCAA TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTCGTAGTCTGTAGATATGCCAGAAATCATTGCACAGT TCATGATCCTTATGG ] [-] EMBL CA762189 [ agaGGACGAGAC AAGG GG GG AGTGGTGGAGGGCGTGCCGGAGAGG TTCNACGCGTTTGACGCCGTGTTCGTTTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAGGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGAACATCCTGAAGCTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA TGATGAACATGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT TAATGATCCTTATGG CAGCCAAGTTACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU058234 [ GCGGCTAGGGGAGGCGGCAGTGNTGGAGGGCGTGCCGGAGAGGTTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGTCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT TAAaa ] consensusID : consensus_10662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 581 fasta sequence [CTCCCGTTCCGGCCAACACCACCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTCCTCCCTACCCCGCGACCCCGACCCTACTCGCGACCCATCAACCCGGGGTTTCCTACCNNCCTACGGCTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGTTGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTT-NTGACGAGCCTAATTTGGAATTTGCTGTTTTGCAGTTTCAATGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAAA] [+] EMBL OSC3691 [CTCCCGTTCCGGCCAACACCACCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTCCTCCCTACCCCGCGACCCCGACCCTACTCGCGACCCATCAACCCGGGGTTTCCTACCNNCCTACGGCTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGTTGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTT NTGACGAGCCTAATTTGGAATTTG ] [+] EMBL AU164050 [ CTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCA GGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAATGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10662#0 CGGCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCC 60 consensus_10662#1 ---------------------------------------CTCCCGTTCCGGCCAACACCA 21 * * *** *** * consensus_10662#0 GTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTG 120 consensus_10662#1 CCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTC 81 * ** * * *** ** **** ******* * ** * ***** consensus_10662#0 GTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTG 180 consensus_10662#1 CTCCCTAC-CCCGCGACCCCGACCCTACTCGCGA--------------CCCATCAACCCG 126 * * * * ** * *** * * * ** *** * * * * * consensus_10662#0 AGGTGCTTCCACTTGGAGGGAGGCGGAGGCGGCAGGGGAGGCGGAGTGGTGGAGGGCGTG 240 consensus_10662#1 GGGT-TTCCTACCN-------------NCCTAC------GGCTCAGCCTT-----GCGTG 161 *** * * ** * * *** ** * ***** consensus_10662#0 CCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTC 300 consensus_10662#1 CCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTC 221 ************************************************************ consensus_10662#0 TCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTC 360 consensus_10662#1 TCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTC 281 ************************************************************ consensus_10662#0 ATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGG-AACATCCTGAAGT 419 consensus_10662#1 ATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGT 341 ******************************** ************* ***** ******* consensus_10662#0 TGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTT 479 consensus_10662#1 TGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTT 401 ******************** **** ********************************** consensus_10662#0 TGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAATG 539 consensus_10662#1 TGAAATATTAGAGTTTNT-GACGAGCCTAATTTGGAATTTGCTGTTTTGCAGTTTCAATG 460 **************** * ********** **** * ********************** consensus_10662#0 ATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATC 599 consensus_10662#1 ATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATC 520 ************************************************************ consensus_10662#0 AACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAATGATCCTTATG 659 consensus_10662#1 AACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAA 580 ************************************************* * * consensus_10662#0 GCCAGCACACACACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGC 719 consensus_10662#1 A----------------------------------------------------------- 581 consensus_10662#0 AAAAAAAAAAAAAAAAAAA 738 consensus_10662#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||