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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence
[CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC--T-GCGTCGACC-GGT-GGCTCC-TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT-TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG-CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACTGAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTTTAGATTTCCTTAAAAAAA]
[+] EMBL AK059146 [CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCGTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTAC ]
[+] EMBL CB966911 [ GCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACCTTGGCGTCGACCGGGTGGGTTCCTTCTCTTGCAGGCGGACGTGCCCGTTTGGCCGGGTTATACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGGGAGCCGGCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTATCCTGCCTGGAAACCGGTTCGTCTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTAGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACTGAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTT ]
[+] EMBL C73302 [ TACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCNAGGACGGCGGCA NGGTGGCCTGACGGAGTGCTCCGTCTGTTTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCNTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGA GGTAACAAGCCAGGGGTGGCAGCGAAGACA ACCGGCGAGCCG CGCTCGTTGAAGACATGGTGATCTGGTTCTNTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGNAATGCTTTTAATTTGTTTG TTCCTGCCTGGAAACCGGTTTGTTTTTTTTTC TATAT ]
[-] EMBL CF335998 [ CCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCGTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCCCACATCGTCAGCAT TTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGAAAAA AAAATAAGTAGGTATATATAATAAAAACGGTTTCTTTAGATTTCCTTAAAAAAA]
consensusID : consensus_10664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence
[ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGTGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCG-TCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATTTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGA]
[+] EMBL CB965330 [ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGTGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCG TCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATTTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGA]
[+] EMBL CB965937 [ GAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGG GGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAG GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGACGATCGCTGAAGACATGGTGATCTGGTTCTCTGACATGCTCGATCC ]
consensusID : consensus_10664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[AGCGAGGACGGCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAGGCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU098320 [AGCGAGGACGGCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAGGCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10664#0 ----------------------CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCT 38
consensus_10664#2 ------------------------------------------------------------
consensus_10664#1 ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCT 60
consensus_10664#0 ACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACG 98
consensus_10664#2 --------------------------------------------------AGCGAGGACG 10
consensus_10664#1 ACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACG 120
**********
consensus_10664#0 GCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAG- 157
consensus_10664#2 GCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAG- 69
consensus_10664#1 GCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGT 180
****** ****************************************** ****** **
consensus_10664#0 GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 217
consensus_10664#2 GCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 129
consensus_10664#1 GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 240
************ ***********************************************
consensus_10664#0 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 277
consensus_10664#2 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 189
consensus_10664#1 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 300
************************************************************
consensus_10664#0 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGG 337
consensus_10664#2 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGG 249
consensus_10664#1 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGG 360
********************************************* **************
consensus_10664#0 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 397
consensus_10664#2 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 309
consensus_10664#1 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 420
************************************************************
consensus_10664#0 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTT-CTTATATTATGC 456
consensus_10664#2 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGC 369
consensus_10664#1 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTT-CTTATATTATGC 479
*********************************************** ************
consensus_10664#0 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTC 516
consensus_10664#2 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAA 429
consensus_10664#1 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTC 539
***************************************************** *
consensus_10664#0 AGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACT 576
consensus_10664#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 448
consensus_10664#1 AGCATTTTTTTT-CTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACT 598
* *
consensus_10664#0 GAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTTTAGATTTCCTTAAAAAA 636
consensus_10664#2 ------------------------------------------------------------
consensus_10664#1 GA---------------------------------------------------------- 600
consensus_10664#0 A 637
consensus_10664#2 -
consensus_10664#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||