These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence [CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC--T-GCGTCGACC-GGT-GGCTCC-TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT-TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG-CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACTGAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTTTAGATTTCCTTAAAAAAA] [+] EMBL AK059146 [CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCGTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTAC ] [+] EMBL CB966911 [ GCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACCTTGGCGTCGACCGGGTGGGTTCCTTCTCTTGCAGGCGGACGTGCCCGTTTGGCCGGGTTATACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGGGAGCCGGCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTATCCTGCCTGGAAACCGGTTCGTCTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTAGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACTGAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTT ] [+] EMBL C73302 [ TACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCNAGGACGGCGGCA NGGTGGCCTGACGGAGTGCTCCGTCTGTTTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCNTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGA GGTAACAAGCCAGGGGTGGCAGCGAAGACA ACCGGCGAGCCG CGCTCGTTGAAGACATGGTGATCTGGTTCTNTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGNAATGCTTTTAATTTGTTTG TTCCTGCCTGGAAACCGGTTTGTTTTTTTTTC TATAT ] [-] EMBL CF335998 [ CCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC T GCGTCGACC GGT GGCTCC TCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTT TACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAG CACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCCCACATCGTCAGCAT TTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGAAAAA AAAATAAGTAGGTATATATAATAAAAACGGTTTCTTTAGATTTCCTTAAAAAAA] consensusID : consensus_10664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGTGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCG-TCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATTTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGA] [+] EMBL CB965330 [ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGTGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCG TCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTCAGCATTTTTTTTCTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACTGA] [+] EMBL CB965937 [ GAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGG GGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAG GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGACGATCGCTGAAGACATGGTGATCTGGTTCTCTGACATGCTCGATCC ] consensusID : consensus_10664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGCGAGGACGGCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAGGCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU098320 [AGCGAGGACGGCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAGGCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGCAAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10664#0 ----------------------CGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCT 38 consensus_10664#2 ------------------------------------------------------------ consensus_10664#1 ACGCTAATTACCTCACTAAGGGATAGCTGCGGCGCTGCACAATGAGCTACCTCCTCTCCT 60 consensus_10664#0 ACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACG 98 consensus_10664#2 --------------------------------------------------AGCGAGGACG 10 consensus_10664#1 ACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACG 120 ********** consensus_10664#0 GCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAG- 157 consensus_10664#2 GCGGCANCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCNAG- 69 consensus_10664#1 GCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGT 180 ****** ****************************************** ****** ** consensus_10664#0 GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 217 consensus_10664#2 GCGACGAGGCGTNTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 129 consensus_10664#1 GCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTC 240 ************ *********************************************** consensus_10664#0 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 277 consensus_10664#2 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 189 consensus_10664#1 CTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAG 300 ************************************************************ consensus_10664#0 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGG 337 consensus_10664#2 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAANACATGGTGATCTGG 249 consensus_10664#1 CCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGG 360 ********************************************* ************** consensus_10664#0 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 397 consensus_10664#2 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 309 consensus_10664#1 TTCTCTGCCATGCTCGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATG 420 ************************************************************ consensus_10664#0 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTT-CTTATATTATGC 456 consensus_10664#2 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGC 369 consensus_10664#1 CTTTTTATTTGTTTGTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTT-CTTATATTATGC 479 *********************************************** ************ consensus_10664#0 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTC 516 consensus_10664#2 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCAAAAAAAA 429 consensus_10664#1 AAATTAACATGACGATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTCACATCGTC 539 ***************************************************** * consensus_10664#0 AGCATAATATAAACTTTAGCAAGTTTACTATTGGGCGTAGATTACCTATACAAGAGAACT 576 consensus_10664#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 448 consensus_10664#1 AGCATTTTTTTT-CTTTTGCAAGTTTTCTATTGGGCGTTGATTACCTATTCAAGAGAACT 598 * * consensus_10664#0 GAAAAACAAACTACGTAGGTATATATAATAAAAACGGGATCTTTAGATTTCCTTAAAAAA 636 consensus_10664#2 ------------------------------------------------------------ consensus_10664#1 GA---------------------------------------------------------- 600 consensus_10664#0 A 637 consensus_10664#2 - consensus_10664#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||