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Oryza sativa
cluster # 10678 cluster # 10678       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10678#0 length = 728 sequences # 7  
consensus_10678#1 length = 392 sequences # 1  

consensusID : consensus_10678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 728
fasta sequence
                              [TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT-GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA-CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA]

[+] EMBL CF301957             [TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTA                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK058649             [      AGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAAT                                                                                             ]
[+] EMBL CF295130             [          GCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCATCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTT                                                                                                                                                                                                                                                                             ]
[+] EMBL AU058249             [                                        GACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCATGGATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA                                                                                                                                                                                                                                                         ]
[+] EMBL CA753424             [                                                CTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATGATTGCATGGTATTTTGTGTTTTTGGAGGAGCTGTGGTTTC ATTTTAGCTGGGATGTGGAGATACGAGTCTGGCCAGTGCCAGTGGTTACTCTCAGGGTGCTGCCCTTGTCCTGACAGAAGTGATACTATGG TGCACCCATTTATTGGTTATGGTGTGTATTGAACTGTCTATGTCCACATGGCt                                                                                                         ]
[-] EMBL CF295131             [                                                                                                                                                           CGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA]
[+] EMBL AU101471             [                                                                                                                                                                                                                                                                  CCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTAT GTTGCA CCATTTAAaaaaaa                                                                                                                                           ]


>consensus_10678#0 TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCA CGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGC TCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATT CAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAA GATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGC AGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGAT ATCCACTATTTTCTTCTGAGGCCTTCATGATTTTAATCCAGGCTGCAGAAGATTTGTAGG AAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT GCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCACCATTTAATGGTTATGTTGTGTATT GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCA TAAAAAAA



consensusID : consensus_10678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence
                              [ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA]

[-] EMBL OS31698              [ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA]


>consensus_10678#1 ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACC AGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTT GGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAG TTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTA ATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAA TGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGG TTTGCTGCACTGTCAGCATAATTGAGCAGTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10678#0      TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCA 60
consensus_10678#1      ------------------------------------------------------------
                                                                                   

consensus_10678#0      CGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGC 120
consensus_10678#1      ------------------------------------------------------------
                                                                                   

consensus_10678#0      TCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATT 180
consensus_10678#1      ------------------------------------------------------------
                                                                                   

consensus_10678#0      CAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAA 240
consensus_10678#1      ------------------------------------------------------------
                                                                                   

consensus_10678#0      GATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGC 300
consensus_10678#1      ------------------------------------------------------------
                                                                                   

consensus_10678#0      AGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGAT 360
consensus_10678#1      -----------------------ACCCGGGGA---CCCCGGGG---CTTGCCA---GGGT 28
                                               **** **    * *  ***    ******   ** *

consensus_10678#0      ATCCACTATTTTCTTCTGAGGCCTTCATGATTTTAATCCAGGCTGCAGAAGATTTGTAGG 420
consensus_10678#1      AACCACATTCCTC----GAGGCCT-CATGATTTAA--CCAGGC-GCAGAAGAATTGTAGG 80
                       * ****  *  **    ******* ******** *  ****** ******** *******

consensus_10678#0      AAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 480
consensus_10678#1      AAGAACAGTGTGATAATAAT-GCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 139
                       ************** ** ** *** **  *******************************

consensus_10678#0      TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 540
consensus_10678#1      TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 199
                       ************************************************************

consensus_10678#0      GCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCACCATTTAATGGTTATGTTGTGTATT 600
consensus_10678#1      GCCCTTGTCAGGAAAGAAGTGATACTATGGT-GCACCATTTAATGGTTATGTTGTGTATT 258
                       ******************************* ****************************

consensus_10678#0      GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 660
consensus_10678#1      GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 318
                       ************************************************************

consensus_10678#0      GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCA 720
consensus_10678#1      GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCA 378
                       ********************************************** *************

consensus_10678#0      TAAAAAAA------ 728
consensus_10678#1      TAATTGAGCAGTTA 392
                       ***   *       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)