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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 962 fasta sequence
[AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG-ACCCGGTGGA-CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT-GACGGA--GGGG-CCCGAGCCCGAGT-CCAAGCCCATGGG-CCGGGCCCAGGGGCTGTACAT-GGGCTCAGACCA-GGCCAAGCTGGG-CTTCCTCC-AGGCAA-TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAGACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAGTGGGAGCTTTGTT]
[+] EMBL AK060077 [AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAGACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAGTGGGAGCTTTGTT]
[+] EMBL OSC8201 [ CTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATNGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCTNGACGGAGGGGGG CCCGAGCCCGAGT CCAAGCCNATGGGCCCGGGCCCAGNGGTTGTACATGGGGCTCAGAACAGGGCAAAGTTGGGNTTTTCTCCAAGGGAATTGAACC ]
[+] EMBL CF278089 [ TCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT AACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTG ]
[+] EMBL OSS10616A [ AGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGG CCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTNTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTNCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGTTGTACAT GGGCTCAGACCA GGCCAAGNTGGG TTTCTCC AGG AA TTAACCTGGTGTTaa ]
[+] EMBL CA756453 [ TGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACNACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCTTTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAA ]
[+] EMBL AU085990 [ gnCAGTGCGGTTGTTGGAACCCGGTGGACCCCGTCNTCGCGGTCCTTCTTTGGGATGATCAA NTCATGGACGATCCGCT GACGGA GGGGCCCCGAGCCCGANTCCCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACTTGGTGTTCACCGACGGCA CTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAA TG CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCCGTTCGCCCGC GCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAaaaaaa ]
consensusID : consensus_10680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[GGGGGTGTCCCCCTGATTTCCCTCCNGGATGGTTCCCANAAAGCTGCCCCCATTGGGCCGGGCCCCATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCTGTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCGCCGCACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACACAAGATGGAGACGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTGTTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTCAGTAACACACTATACCGAAGAACACAGACACTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA]
[+] EMBL BI806998 [GGGGGTGTCCCCCTGATTTCCCTCCNGGATGGTTCCCANAAAGCTGCCCCCATTGGGCCGGGCCCCATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCTGTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCGCCGCACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACACAAGATGGAGACGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTGTTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTCAGTAACACACTATACCGAAGAACACAGACACTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA]
consensusID : consensus_10680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCATGGGCCGGGCCCAGGGGGCTGTACATGGGTCAGACCAGGCCAAGCTGGGCTTCCTCCAGGCAATGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGTTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAAAAAAAAAAAAAAA]
[-] EMBL CF278090 [CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCATGGGCCGGGCCCAGGGGGCTGTACATGGGTCAGACCAGGCCAAGCTGGGCTTCCTCCAGGCAATGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGTTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10680#0 AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCA 60
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ------------------------------------------------------------
consensus_10680#0 ACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCG 120
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ------------------------------------------------------------
consensus_10680#0 AGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCA 180
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ------------------------------------------------------------
consensus_10680#0 CCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCA 240
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ------------------------------------------------------------
consensus_10680#0 GTGCGGGTGGTGGACCCGGTGGACCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTC 300
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ---------------------------------------------------GGGGGTGTC 9
consensus_10680#0 ATGGACGATCCGCTGACGGAGGGGCCCGAGCCCGAGTCCAAGCCCAT-GGGCCGGGCCCA 359
consensus_10680#2 ---------CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCAT-GGGCCGGGCCCA 50
consensus_10680#1 CCCCTGATTTCCCTCCNGGATGGTTCCCAN---AAAGCTGCCCCCATTGGGCCGGGCCCC 66
* ** *** ** ** * * * ***** ***********
consensus_10680#0 GGGG-CTGTACATGGGC-TCAGACCAGGCCAAGCTGGGC-TTCCTCCAGGCAATGAACCT 416
consensus_10680#2 GGGGGCTGTACATGGG--TCAGACCAGGCCAAGCTGGGC-TTCCTCCAGGCAATGAACCT 107
consensus_10680#1 ATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCT 126
** *********** ********************* ********* ***** ****
consensus_10680#0 GGTGTTCA-CCGACGGCACCTACAAC-GGCAGCGTGGTCACCGTGCTCGGCCGCAACTGC 474
consensus_10680#2 GGTGTTCA-CCGACGGCACCTACAAC-GGCAGCGTGGTCACCGTGCTCGGCCGCAACTGC 165
consensus_10680#1 GTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCG-CCGCA-CTGC 184
* ****** ****** *** * ********************** ***** ****
consensus_10680#0 CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGC-GGCACCGGCGCCTTCCGC-TTCG 532
consensus_10680#2 CCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGC-GGCACCGGCGCCTTCCGC-TTCG 223
consensus_10680#1 CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCG 244
***** ****************************** ****************** ****
consensus_10680#0 CCCGCGGCTACGCCCAGGCCAGGACGCACACCC-TGGACCTCAAGACCGGCGACGCCATT 591
consensus_10680#2 CCCGCGGTTACGCCCAGGCCAGGACGCACACCC-TGGACCTCAAGACCGGCGACGCCATT 282
consensus_10680#1 CCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATT 304
******* ************************* **************************
consensus_10680#0 GTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACAC 651
consensus_10680#2 GTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACAC 342
consensus_10680#1 GTCGAGTACAACGTCTACGTCATGCACTGATCACA-CAAGATGGAGACGATGCTTCACAC 363
************** ******************** *********** ************
consensus_10680#0 AAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 711
consensus_10680#2 AAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 402
consensus_10680#1 AAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 423
***************** ******************************************
consensus_10680#0 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACAC-AGGGGAGTTTAGTTGCTGCAGTG 770
consensus_10680#2 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACAC-AGGGGAGTTTAGTTGCTGCAGTG 461
consensus_10680#1 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTG 483
************************************ ***********************
consensus_10680#0 TT-GATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 829
consensus_10680#2 TT-GATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 520
consensus_10680#1 TTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 543
** *********************************************************
consensus_10680#0 GTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAG 889
consensus_10680#2 GTTTAAAAAAAAAAAAAAA----------------------------------------- 539
consensus_10680#1 GTTTAGTCTTTCAGTAATAACTTTCTTGGTT-CAGTAACACACTATACCGAAGAACACAG 602
***** * ** *
consensus_10680#0 ACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAG 949
consensus_10680#2 ------------------------------------------------------------
consensus_10680#1 ACA-CTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA---------- 651
consensus_10680#0 TGGGAGCTTTGTT 962
consensus_10680#2 -------------
consensus_10680#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||