These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1377 fasta sequence [AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACATTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCAAGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAACAGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGTTCATTACTTCTAGAACTTGGCCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGGACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTTTGTTCCAGGAACAGGATCTGTTCAAGTGGGCCCAATATTTTCTAGTCTTACTTCACATCGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT] [+] EMBL CB671050 [AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAAC ] [+] EMBL CF322892 [ AAAAATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAAT ] [+] EMBL CB673379 [ CCCCGTCTCCTCT CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACG ] [+] EMBL CB639676 [ GATGTTCACATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTC ] [+] EMBL CB623306 [ GTGCAACCCTCA ATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCCGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCCGGTTCCACCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACATTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTA ] [-] EMBL CA882879 [ ATGGAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCAAGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAACAGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGTTCATTACTTCTAGAACTTGGCCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGGACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTTTGTTCCAGGAACAGGATCTGTTCAAGTGGGCCCAATATTTTCTAGTCTTACTTCACATCGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT] consensusID : consensus_10686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence [AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCATTGTCTCATAGATTCCGACATTCAT] [+] EMBL CB640025 [AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCATTGTCTCATAGATTCCGACATTCAT] [+] EMBL CB639624 [AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10686#0 AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGG 60 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 GGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCC 120 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 TGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGA 180 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 ATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGC 240 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 GTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAA 300 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 TATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCC 360 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 TCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGAC 420 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 AATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTC 480 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 GTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTG 540 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 AACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTT 600 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 CGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAA 660 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 ATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGT 720 consensus_10686#1 ------------------------------------------------------------ consensus_10686#0 CAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACA 780 consensus_10686#1 ------AATGGTCTTACCTTGAC-TTTTATCTGA---GTTGCCCACA--TTCTGAATCAG 48 * ** * * ** * * **** **** ***** **** * * consensus_10686#0 TTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGA 840 consensus_10686#1 TCTGAAAATTTAGTTATTTACTTCCAA---------TACTCTTTACAGGACAAACTCTGA 99 * ** ** * * ** ** * *** * ************* consensus_10686#0 ATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAA 900 consensus_10686#1 ATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAAT-CATGAA 158 ***************************************************** ****** consensus_10686#0 AGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACT 960 consensus_10686#1 AGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACT 218 ************************************************************ consensus_10686#0 ATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCA 1020 consensus_10686#1 ATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGT----CCG 274 *************************************************** ** consensus_10686#0 AGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAAC 1080 consensus_10686#1 TGCCATTT---------------TTTTATTTTTTCT-CGTTATGAATTAGCTAATATAAC 318 **** * * * * * * ** * * * * * * * *** consensus_10686#0 AGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGT-TCATTACTTCTAGAACTTGG 1139 consensus_10686#1 AGTT-------ATGTTTTAGCTTCATG-AATAGTTTGATCTCTTTTCTGTTTGTTCTTGC 370 *** ** * **** **** *** * ** ** ** * * **** consensus_10686#0 CCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGG 1199 consensus_10686#1 TGAGTTGAGAATACTA-TGCATGTAGCTATTATT-CTTCAATGATAGG-GAAAGTATTAG 427 ** *** * *** * ** * * ***** * * * * * * consensus_10686#0 ACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTT 1259 consensus_10686#1 TGAAG----TTAGATATATCAATTTGAGCTA--TTTGATTGAGGGTAATATGGTAAATGT 481 ** ** ** * ** ** ** * * * ** ** * * * * * consensus_10686#0 TGTTCCAGGAACAGGATCTGT-TCAAGTGGGCCCAAT-ATTTTCTAGTCTTACTTCACAT 1317 consensus_10686#1 TTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCA---TTGTCTCATAG 538 * ** *** ** ** * * ** ***** * ** * ** *** * consensus_10686#0 CGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT 1377 consensus_10686#1 -ATTCCGACATTCAT--------------------------------------------- 552 ** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||