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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1462 fasta sequence
[ACGTACAACATTCATCATCCATCACCCATATCGTTCAAGATGCCGCCACGAAACGGCAACCTCGTCCTCGCCGCCGCCGCCGCCGCGCTGCTCGTGCTGCTGGCGTCGCCGCCGTCGTGCTCCGCCGCGGCGCCTCGTCGTCGGGACCCCGTGGTGGTTCCCGTNACCAGGGACCCGGCCACCTCGCTCTACACCATCCCCGTNAGGTACTACGACAACCTCGTCGTCGACCTCGCCGGCCCGCTCGTTTGGTCGANGTGCGNCGCCGACCACCTGCCGGCGTCGCTGTCCTGCCAGGACCCGACGTGCGTGGTCGCCAACGCGTACCGTGCTCCGACCTGCAAGGTCACCGGCGGCGGCGGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAACCCGGTGACCGGGCAGTGCGCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACCACCGACGGCAAGAACCCTCTGATCCAGGTCTCCGTCAAGGCCGTGGCGGCGTGCGCGCCCAAGAGGCTCCTGGCGCGGCTGCCGCGCGGCGCCACGGGCGTCGCCGGCCTCGCCGCCTCCGGCCTCGCGCTCCCGGCGCAGGTCGCGTCGTCGCAGGGCGTCGCCGGCAGGTTCCTCCTCTGCCTCCCGAGGCTCGGGTACGGCCAGGGCGTGGCCATCTTCGGCGGCGGCCCGATATACCTCGGCGAAGGGCTGCCGGACTTCACGACGACGCTGGACTACACCCCGCTCGTCGCCAAGAGAGACAACCCCGGCTACTACGTCACCGCCAACGCCATCGCCCTCGATGACGCGCGGCTACCCCTCCCGAGCGGCGCGCTCGCCGCCGGCGGCGT-GGCGCTGCGCACCGCCGTGCCGTTCGGCCAACTCCGGCCGGACGTGTTCCGCCCGTTCGTCCGGGAGTTCGAGAAGGGCCTGAACCGGAGCGACGCGAAGGTCGCCGCCGTGGCGCCGTTCCCGCTCTGCTACAGGGCGTCGATGCTGGGGAACACGCGGATCGGCTACTTTGTGCCGGCGGTGAGGCTGATGCTCGCCGGCGGGAAGAACTACACGATGACGGGGACCAACTCGATGGTGGACGTGAAGGGGGGCAAGGCGTGCCTGGCCTTCGTGGAGATGAAGT-CCGGCGACGCCGCCAGTTCGCCGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAACATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCGAGGCTGCCGTTCTACACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACTGTTTCGCGGCCATGTAACTGTAACTGTAATGTCGGTGTCCGGCATGCCATATGCCCGTATCTGTCACCCATTTAAGAACTTTGCTTTTAATATATAGTCCATCTACCATCTAAAAAAAGTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU068987 [ACGTACAACATTCATCATCCATCACCCATATCGTTCAAGATGCCGCCACGAAACGGCAACCTCGTCCTCGCCGCCGCCGCCGCCGCGCTGCTCGTGCTGCTGGCGTCGCCGCCGTCGTGCTCCGCCGCGGNGCCTCGTCGTCGGGACCCCGTGGTGGTTCCCGTNACCAGGGACCCGGCCACCTCGCTCTACACCATCCCCGTNAGGTACTACGACAACCTCGTCGTCGACCTCGTCGGNCCGCTCGTTT ]
[+] EMBL AU068900 [ CACCCATATCGTTCAANATGCCGCCACGAAACGGCAACCTCGTCCTCGCCGCCGCCGCCGCCGCGCTGCTCGTGCTGCTGGCGTCGCCGCCGTCGTGCTCCGCCGCGGCGCCTCGTCGTCGGGACCCCGTGGTGGTTCCCGTNACCAGGGACCCGGCCACCTCGCTCTACACCATCCCCGTAAGGTACTACGACAACNTCGTNGTCGACCTCGCCGGCCCGNTCGTTTGGTCGANGTGCGNCGCCGACCACCTGC ]
[+] EMBL AK105806 [ AAGATGCCGCCACGAAACGGCAACCTCGTCCTCGCCGCCGCCGCCGCCGCGCTGCTCGTGCTGCTGGCGTCGCCGCCGTCGTGCTCCGCCGCGGCGCCTCGTCGTCGGGACCCCGTGGTGGTTCCCGTCACCAGGGACCCGGCCACCTCGCTCTACACCATCCCCGTCAGGTACTACGACAACCTCGTCGTCGACCTCGCCGGCCCGCTCGTCTGGTCGACGTGCGCCGCCGACCACCTGCCGGCGTCGCTGTCCTGCCAGGACCCGACGTGCGTGGTCGCCAACGCGTACCGTGCTCCGACCTGCAAGGTCACCGGCGGCGGCGGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAACCCGGTGACCGGGCAGTGCGCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACCACCGACGGCAAGAACCCTCTGATCCAGGTCTCCGTCAAGGCCGTGGCGGCGTGCGCGCCCAAGAGGCTCCTGGCGCGGCTGCCGCGCGGCGCCACGGGCGTCGCCGGCCTCGCCGCCTCCGGCCTCGCGCTCCCGGCGCAGGTCGCGTCGTCGCAGGGCGTCGCCGGCAGGTTCCTCCTCTGCCTCCCGAGGCTCGGGTACGGCCAGGGCGTGGCCATCTTCGGCGGCGGCCCGATATACCTCGGCGAAGGGCTGCCGGACTTCACGACGACGCTGGACTACACCCCGCTCGTCGCCAAGAGAGACAACCCCGGCTACTACGTCACCGCCAACGCCATCGCCCTCGATGACGCGCGGCTACCCCTCCCGAGCGGCGCGCTCGCCGCCGGCGGCGT GGCGCTGCGCACCGCCGTGCCGTTCGGCCAACTCCGGCCGGACGTGTTCCGCCCGTTCGTCCGGGAGTTCGAGAAGGGCCTGAACCGGAGCGACGCGAAGGTCGCCGCCGTGGCGCCGTTCCCGCTCTGCTACAGGGCGTCGATGCTGGGGAACACGCGGATCGGCTACTTTGTGCCGGCGGTGAGGCTGATGCTCGCCGGCGGGAAGAACTACACGATGACGGGGACCAACTCGATGGTGGACGTGAAGGGGGGCAAGGCGTGCCTGGCCTTCGTGGAGATGAAGT CCGGCGACGCCGCCAGTTCGCCGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAACATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCGAGGCTGCCGTTCTACACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACTGTTTCGCGGCCATGTAACTGTAACTGTAATGTCGGTGTCCGGCATGCCATATGCCCGTATCTGTCACCCATTTAAGAACTTTGCTTTTAATATATAGTCCA ]
[+] EMBL AU031278 [ GACGACGCTGGACTACACCCCGCTCGTCGCCAAGAGAGACAACCCCGGCTACTACGTCACCGCCAACGCCATCGCCCTCGATGACGCGCGGCTACCCCTCCCGAGCGGCGCGCTCGCCGCCGGCGGCGTNGGCGCTGCGCACCGCCGTGCCGTTCGGCCAACTCCGGCCGGACGTGTTCCGCCCGTTCGTCCGGGAGTTCGAGAAGGGCCTGAACCGGAGCGACGCGAAGGTCGCCGCCGTGGCGCCGTTCCCGCTCTGCTANAGGGCGTCGA ]
[+] EMBL AU181351 [ ATGCTGGGGAACACGCGGATCGGCTACTTTGTGCCGGCGGTGAGGCTGATGCTCGCCGGCGGGAAGAACTACACGATGACGGGGACCAACTCGATGGTGGACGTGAAGGGGGGCAAGGCGTGCCTGGCCTTCGTGGAGATGAAGT CCGGCGACGCCGCCAGTTCGCCGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAACATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCGAGGCTGCCGTTCTACACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACTGTTTCGCGGCCATGTAACTGTAACTGTAATGTCGGTGTCCGGCATGCCATATGCCCGTATCTGTCACCCATTTAAGAACTTTGCTTTTAATATATAGTCCATCTACCATCTAAAAAAA ]
[+] EMBL AU031277 [ CGTGGAGNTGAAGTCCCGGCGACGCCGCCAGTTCGCCGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAACATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCGAGGCTGCCGTTCTACACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACTGTTTCGCGGCCATGTAACTGTAACTGTAATGTCGGTGTCCGGCATGCCATATGCCCGTATCTGTCACCCATTTAAGAACTTTGCTTTTAATATATAGTCCATCTACCATCTACATGCNGTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[CCGTCATCATCCATCACCCATATCGTTCAAGATGCCGCCACGAAACNGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAACCCGGTGACCGGCAAGTGCGCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACCACCGACNGCAAGAACCCTCTGATCCAGGTCTCCGTCAAGGCCGTGGNGCGTTGCGGCCAATGAGGCTCCTGGCGCGGCTGCCGNGCNGCCAC]
[+] EMBL C26221 [CCGTCATCATCCATCACCCATATCGTTCAAGATGCCGCCACGAAACNGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAACCCGGTGACCGGCAAGTGCGCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACCACCGACNGCAAGAACCCTCTGATCCAGGTCTCCGTCAAGGCCGTGGNGCGTTGCGGCCAATGAGGCTCCTGGCGCGGCTGCCGNGCNGCCAC]
consensusID : consensus_10693#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence
[TGTAACTGTAACTGTAATGNCGGTGTCCGGCATNCNATATGCCGTNNATCTGTCACCCATTTAAGAACTTTGCTTTTANTATATAGTCCATGTACCATCTANAAAAANAAAAAAAAAAA]
[+] EMBL AU068901 [TGTAACTGTAACTGTAATGNCGGTGTCCGGCATNCNATATGCCGTNNATCTGTCACCCATTTAAGAACTTTGCTTTTANTATATAGTCCATGTACCATCTANAAAAANAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10693#0 ACGTACAACATTCATCATCCATCACCCATATCGTTCAAGATGCCGCCACGAAACGGCAAC 60
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CTCGTCCTCGCCGCCGCCGCCGCCGCGCTGCTCGTGCTGCTGGCGTCGCCGCCGTCGTGC 120
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 TCCGCCGCGGCGCCTCGTCGTCGGGACCCCGTGGTGGTTCCCGTNACCAGGGACCCGGCC 180
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 ACCTCGCTCTACACCATCCCCGTNAGGTACTACGACAACCTCGTCGTCGACCTCGCCGGC 240
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CCGCTCGTTTGGTCGANGTGCGNCGCCGACCACCTGCCGGCGTCGCTGTCCTGCCAGGAC 300
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CCGACGTGCGTGGTCGCCAACGCGTACCGTGCTCCGACCTGCAAGGTCACCGGCGGCGGC 360
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAACCCGGTGACCGGGCAGTGC 420
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACCACCGACGGCAAGAACCCT 480
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CTGATCCAGGTCTCCGTCAAGGCCGTGGCGGCGTGCGCGCCCAAGAGGCTCCTGGCGCGG 540
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CTGCCGCGCGGCGCCACGGGCGTCGCCGGCCTCGCCGCCTCCGGCCTCGCGCTCCCGGCG 600
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CAGGTCGCGTCGTCGCAGGGCGTCGCCGGCAGGTTCCTCCTCTGCCTCCCGAGGCTCGGG 660
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 TACGGCCAGGGCGTGGCCATCTTCGGCGGCGGCCCGATATACCTCGGCGAAGGGCTGCCG 720
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GACTTCACGACGACGCTGGACTACACCCCGCTCGTCGCCAAGAGAGACAACCCCGGCTAC 780
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 TACGTCACCGCCAACGCCATCGCCCTCGATGACGCGCGGCTACCCCTCCCGAGCGGCGCG 840
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 CTCGCCGCCGGCGGCGTGGCGCTGCGCACCGCCGTGCCGTTCGGCCAACTCCGGCCGGAC 900
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GTGTTCCGCCCGTTCGTCCGGGAGTTCGAGAAGGGCCTGAACCGGAGCGACGCGAAGGTC 960
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GCCGCCGTGGCGCCGTTCCCGCTCTGCTACAGGGCGTCGATGCTGGGGAACACGCGGATC 1020
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GGCTACTTTGTGCCGGCGGTGAGGCTGATGCTCGCCGGCGGGAAGAACTACACGATGACG 1080
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 GGGACCAACTCGATGGTGGACGTGAAGGGGGGCAAGGCGTGCCTGGCCTTCGTGGAGATG 1140
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 AAGTCCGGCGACGCCGCCAGTTCGCCGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAAC 1200
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 ATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCGAGGCTGCCGTTCTAC 1260
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 ------------------------------------------------------------
consensus_10693#0 ACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACT 1320
consensus_10693#2 ------------------------------------------------------------
consensus_10693#1 --------------------------------CCGTCATCATCCATCACCCATATCGTTC 28
consensus_10693#0 GTTTCGCGGCCATGTAACTGTAACTGTAATGTCG----GTGTCCGGCATGCC---ATATG 1373
consensus_10693#2 ------------TGTAACTGTAACTGTAATGNCG----GTGTCCGGCATNCN---ATATG 41
consensus_10693#1 AAGATGCCGCCACGAAACNGCGACTGCAGCAAGAACGTGTGCACGGCGTACCCGTACAAC 88
* *** * **** * *** **** * * * *
consensus_10693#0 CC-CGTATCTGTCA---CCCATTTAAGAACTTTGCTTTTAATATATAGTCCAT--CTACC 1427
consensus_10693#2 CCGTNNATCTGTCA---CCCATTTAAGAACTTTGCTTTTANTATATAGTCCAT--GTACC 96
consensus_10693#1 CCGGTGACCGGCAAGTGCGCCGCCGGGAACCTTGCCCACACGAGGTTCATCGCCAACACC 148
** * * * * * * **** **** * * * * ***
consensus_10693#0 ATCTAAAAAAAGTAAAAAAAAAAAAAAAAAAAAAA------------------------- 1462
consensus_10693#2 ATCTANAAAAANAAAAAAAAAAA------------------------------------- 119
consensus_10693#1 ACCGACNGCAAGAACCCTCTGATCCAGGTCTCCGTCAAGGCCGTGGNGCGTTGCGGCCAA 208
* * * ** * *
consensus_10693#0 --------------------------------
consensus_10693#2 --------------------------------
consensus_10693#1 TGAGGCTCCTGGCGCGGCTGCCGNGCNGCCAC 240
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||