These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 914 fasta sequence [CACCACGAACTCTCCAAGCTCTTCTTCCTCCTGAGCACTCTAGCTTCACTGCATTGCTTTGCAGCAGCAACAGAAACAGAGAGAGAGAAATACACTAGCTGATTGATCCAGTGGAATTTGGTAGCTGTGATGGCGAAGAAGATCGCGCCGGCGGCCAACCTGAAGCAGATCCTGAGGAGGTGCTCGAGCCTTGGGAGGAGGCAGCAGCAGCAGGGCGCGG-TGCCGAGGGGCCACTTCCCGGTGTACGTCG-GCGAGAGCGGTTG-CCGGTACGTGGTGCCCATCGCCTGCCTGGAGCACCCGGACTTCCTGCTGCTGCTTCGGAAGGCCGAGGAGGAGTTCGGCTTCGAGCACGACGCCGCCATCACG-CTTCCCTGCCACG-AGGCCGACTTTGAAGCCCTCCTCGCCGCCCTGACTGCCTGAGTGACCGTTCAATCGATGAGGCGATCGACCACTTACCCGGCCGTCGT-CGTTGGT-GGCTGCCGCTTCCGGCGCACGGTGCTGCAGCAGCTGCCCGGTCGCTCGGCCGGGGCACCAGAGATGCACGCACAC-GCAGTGGCAGTACGGCTGGCATTGGTTGGAGCTTGGTTGTGTAG-TGT--AGA--CC-GGAAA-TGC----AAACA-TGGGA-GTTCCGGCCGGAAA--CC-GA-TCAATCACCGGGCGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTAGTGTACGTACGCGCGTATGTATATAATGCGGAGACCAATTGATTGATTTGTTCCTCGAATGGTTTTGATCAAATGAAGGAGAACACCATTGCTCACCTCAGGCGCGCACTGCCTGATGTGACCTTCTTGATAAAAA] [+] EMBL AK063247 [CACCACGAACTCTCCAAGCTCTTCTTCCTCCTGAGCACTCTAGCTTCACTGCATTGCTTTGCAGCAGCAACAGAAAC AGAGAGAGAAATACACTAGCTGATTGATCCAGTGGAATTTGGTAGCTGTGATGGCGAAGAAGATCGCGCCGGCGGCCAACCTGAAGCAGATCCTGAGGAGGTGCTCGAGCCTTGGGAGGAGGCAGCAGCAGCAGGGCGCGG TGCCGAGGGGCCACTTCCCGGTGTACGTCG GCGAGAGCCGGTG CCGGTACGTGGTGCCCATCGCCTGCCTGGAGCACCCGGACTTCCTGCTGCTGCTTCGGAAGGCCGAGGAGGAGTTCGGCTTCGAGCACGACGCCGCCATCACG CTTCCCTGCCACG AGGCCGACTTTGAAGCCCTCCTCGCCGCCCTGACTGCCTGAGTGACCGTTCAATCGATGAGGCGATCGACCACTTACCCGGCCGTCGT CGTTGGT GGCTGCCGCTTCCGGCGCACGGTGCTGCAGCAGCTGCCCGGTCGCTCGGCCGGGGCACCAGAGATGCACGCACAC GCAGTGGCAGTACGGCTGGCATTGGTTGGAGCTTGGTTGTGTAG TGT AGA CC GGAAA TGC AAACA TGGGA GTTCCGGCCGGAAA CC GA TCAATCACCGGGCGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCT ] [+] EMBL OSS3565A [ CCAAGCTCTTCTTCCTCCTGAGCACTCTAGCTTCACTGCATTGCTTTGCAGCAGCAACAGAAACAGAGAGAGAGAAATACACTAGCTGATTGATCCAGTGGAATTTGGTAGCTGTGATGGCGAAGAAGATCGCGCCGGCGGCCAACCTGAAGCAGATCCTGAGGAGGTGCTCGAGCCTTGGGAGGAGGCAGCAGCAGCAGGGCGCGG TGCCGAGGGGCCACTTTCCGGTGTAC ] [+] EMBL OSS3317A [ TCTTCTNCCTCCTGAGCACTCTAGCTTCACTGCATTGCTTTNCAGCAGCAACAGNAACAGAGAGAGAGAAATACACTAGCTGATTGATCCAGNGGAATTTGGTAGCTNTGATGGCGNAGAAGATCGCGCCGGCGGCCAACCTGAAGNAGATCCTGAGGAGGTGCTCGAGCCTTAGGAGGAGGCAGCAGCAGCAGGNCGCGG TGCCGAGGNGCCACNTCCCGTTGTACGTGGAGCGAGAGCGGTTG CCGATACGTGGTNCCCAT ] [+] EMBL AU033213 [ TCCTCCTGAGCACTCTAGCTTCACTGCATTGCTTTGCAGCAGCAACAGAAACAGAGAGAGAGAAATACACTAGCTGATTGATCCAGTGGAATTTGGTAGCTGTGATGGCGAAGAAGATCGCGNCGGC GCCAACCTGAAGCAGATCCTGAGGAGGTGCTCGAGCCTTGGGAGGAGGCAGCAGCAGCAGGGCGCGGTTGCCGAGGGGCCACTTCCCGGTGTACGTCG GCGAGA NGTTGNCCGGTACGTGGTGCCCATCGCCTGCCTGGAGCACCCGGACTTCCTGCTGCTGCTTCGGAAGGCCGAGGANGAGTTCGGCTTCGAGCACGACGGCGCCATCACGNTTTCCCTGCCACGAAGGCCGACTTTNAAagg ] [+] EMBL AU031152 [ gcgtccGCGATCGACCACTTACCCGNCCGTCGTCCGTTGGTGGGCTGCCGCTTCCGGCGCACNGTGCTGCAGCAGCTGCCCGGTCNCTCGGCCGGGGCACCAGAGATGCACGCACAC GCAGTGGCAGTACGGCTGGCATTGGTTGGAGCTTGGTTGTGTNG TGT AGA CC GGAAA TGC AAACA TGGGN GTTCCGGCCGGAAA CC GA TCAATCACCGGGCGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTNGTGTACGTACGCGCGTATGTATATAATGCGGAGACCAATTGATTGATTTGTTCCTCGAAaaaaa ] [+] EMBL AU097301 [ nGTCGCTCGGCC GGGCACCAGAGATGCACGCACACNGCA TGGCAGTACGGCT GCATTGGTTGGAGCTTGGTTGTGTAG TGT AGA CC GGAAA TGC AAACA TGGGA GTTCCGGCCGGAAA CC GA TCAATCACCGGGCGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTAGTGTACGTACGCGCGTATGTATATAATGCGGAGACCAATTGATTGATTTGTTCCTCGAATGGTTTTGATCAAATGAAGGAGAACACCATTGCTCACCTCAGGCGCGCACTGCCTGATGTGACCTTCTTGATAAAAA] [+] EMBL AU033214 [ TTGGAGCTTGGTTGTGTAG TGT AGA CC GGAAA TGC AAACA TGGGA TTTCCGGCCGGAAA CC GA TCAATCACCGGGCGGNTAGACTCTGCTTCAGCTGCCCGNTGNCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTAGTGTACGTACGCGCGTATGTATATAATGCGGAGACCAATTGATTGATTTGTTCCTCGAATGGTTTTGATCAAATGAAGGAGAACACCATTGCTCACCTCAGGCGCGCACTGCCTGATGTGACCTTCTTGATAAAAA] [+] EMBL AU097261 [ ggngttGTTGTTAAGTTGTTAAGAACCCNGGAAATTGCCAANAACCATTGGGAGGTTCCCGCCCGAAAACCCGGATTCAATCACCGGGCGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTTGCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTAGTGTACGTACGCGCGTATGTATATAATGCGGAGACCAATTGATTGATTTGTTCCTCGAATGGTTTTGATCAAATGAAGGAGAACACCATTGCTCACCTCAGGCGCGCACTGCCTGATGTGACCTTCTTGATAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||