These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1208 fasta sequence [AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATG-GGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAGGCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAGAGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTC-GCCCGCGCGCACGCG-CTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATGATCAG-CCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATCCTAGTGAGTCAAT] [+] EMBL AK107149 [AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATG GGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAGGCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAGAGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTC GCCCGCGCGCACGCG CTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATGATCAG CCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATCCTAGTGAGTCAAT] [+] EMBL AU095269 [ agnatnATCAGCTGTAA CAAAGCNTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATA NTCGTGAGGGGGGCCATGAGAGAACCNGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTNCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTNTCAAATGACCCTGAACTTCTTCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGNGGCGTCAAGCGTGTTGTGTTTACNTC ] [+] EMBL BI805801 [ ACGTCTGCCCGCGCGCACGCGTCTGGTGTACGAGCACCCCGACGCGC TGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCC ATGGTGAAACCATAC AATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTG AAGAGAGTTTATACAG ACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCA C ATCTCAC CCGTTCAGCCCTGTGAATCATGATCAGCCCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAAaaa ] consensusID : consensus_10709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTNNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANNCNNNNNNNNNNCTGGTANNNNNANNNNNNG] [+] EMBL CF196697 [GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTNNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANNCNNNNNNNNNNCTGGTANNNNNANNNNNNG] consensusID : consensus_10709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 390 fasta sequence [AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC-CCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA-CTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATG-GTGTTTCCACGTGGCATCACCAGTCTCAATGACCTGANTTCTGCACTGCTATGAGGACAAAGATGTCANAATGCTGTGCG] [+] EMBL C74764 [AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC NCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGAGCTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATG GTGTTTCCACGTGGCATCACCAGTCTCAATGACCTGANTTCTGCACTGCTATGAGGACAAAGATGTCANAATGCTGTGCG] [+] EMBL AU058401 [ GACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC CCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA CTAAAAGAAGGTTGTCCCTCCACAGA CTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATGTGT TTTCCACGTGGCATCACCA TCTCAATGACCTGACTTCT ] [+] EMBL AU058421 [ GACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATACGCCGTGAGGGCAGCCGTGAGAGACCCTGANGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA GTAAAAGAA GTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAG CTTCGTGNTGCGTTC ACTTATGCG ] consensusID : consensus_10709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNTGGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGGGAGCTTTTCCCCCAGTACCCTATCACCTCCNGGTAACTTAGAAATTTTATGATTAGTGTAATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATCCATTTCCTAAAAAAATATGTAAAATGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031151 [CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNTGGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGGGAGCTTTTCCCCCAGTACCCTATCACCTCCNGGTAACTTAGAAATTTTATGATTAGTGTAATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATCCATTTCCTAAAAAAATATGTAAAATGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10709#1 ------------GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAA--C 46 consensus_10709#2 --------------AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCC 46 consensus_10709#0 AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAA--C 58 consensus_10709#3 -------------------------CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNT 35 ** *** * * consensus_10709#1 AGGCGGC-CGAACCGATCGACGACGATGGTCACCGGCCGGAG--CGAGCAGATGGTGTGC 103 consensus_10709#2 GGCCGAC-CGAGTCGATCGTCGACGAGAGATGGTCACCGGCGT-CGAGCAGATGGTGTGC 104 consensus_10709#0 AGGCGGC-CGAACCGATCGACGACGATGGTCACCGGCCGGAG--CGAGCAGATGGTGTGC 115 consensus_10709#3 GGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGG 95 * ** * **** * ** * * * * * ** * * consensus_10709#1 GTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGA 163 consensus_10709#2 GTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGA 164 consensus_10709#0 GTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGA 175 consensus_10709#3 GAGCTTTTCCCCCAGTACCCTATCACCTCCNGG-TAACTTAGAAATTTTATGATTAGTGT 154 * * * ** * *** ** ** * ** * * * * consensus_10709#1 TACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTT 223 consensus_10709#2 TACC-CGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCT 223 consensus_10709#0 TACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTT 235 consensus_10709#3 AATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATC-----CATTTC 209 * ** * *** * ** * ** *** consensus_10709#1 CTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGC 283 consensus_10709#2 CTGGAGAGA-CTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGC 282 consensus_10709#0 CTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGC 295 consensus_10709#3 CTAAAAAAATATGTAAAA----TGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA- 264 ** * * * * * *** * ** * * ** * consensus_10709#1 CTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAAT 343 consensus_10709#2 CTTCGTGCTGCGTTCAACTTATGCGATGGTGTTT-CCACGTGGCATCACCAGTCTCAA-T 340 consensus_10709#0 CTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAAT 355 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 GACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCG 403 consensus_10709#2 GACCT--GANTTCTGC--ACTGCTAT-GAGGA---CAAAGATGTCAN-AATGCTG-TGCG 390 consensus_10709#0 GACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCG 415 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 GACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCT 463 consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 GACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCT 475 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 NNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANN 523 consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 AACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAA 535 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 CNNNNNNNNNNCTGGTANNNNNANNNNNNG------------------------------ 553 consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 CAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAG 595 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 GCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATG 655 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 CTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAG 715 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 AGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTCGCCCGCGCGCAC 775 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 GCGCTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTG 835 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 CACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCC 895 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 AGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTG 955 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 GAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGC 1015 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 TTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATG 1075 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 ATCAGCCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAG 1135 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------------------------------------------------------ consensus_10709#2 ------------------------------------------------------------ consensus_10709#0 GGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATC 1195 consensus_10709#3 ------------------------------------------------------------ consensus_10709#1 ------------- consensus_10709#2 ------------- consensus_10709#0 CTAGTGAGTCAAT 1208 consensus_10709#3 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||