Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10712 cluster # 10712       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10712#0 length = 1728 sequences # 1  
consensus_10712#1 length = 1376 sequences # 1  
consensus_10712#2 length = 755 sequences # 5  
consensus_10712#3 length = 343 sequences # 1  

consensusID : consensus_10712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1728
fasta sequence
                              [TAGATGCTCTTTTGAATCAAAAGTCTTTGCTTCTGCTAGTGGATTGTCAAATTGATTCTTGCATCCAAAGAAATTCTCATCTGCTGTTGTCTTCCTTAGTACAGATATATCACTGAATGCTTTTATAGCATCTTGTCCAGATGCACGCATCAAAGGAAAGGCATTGACAGAATGAGTAACACGTGGTTCTGAAATATCATCATCTGAACTATTGTTAAGGGCATCATCAGAATCATGCTCGTTACCACTATCTTGTCCATTCTCTGCAAGATCTGTCTCCTCACCTACATATGTGTCTTCAGCAATATTGGCATCACCTATAGTTGTCGTTGTTTCGTATTCCATGTTACCTTGGTTGGTTTGTGGAGACAACGGCAATGCTGTTGAATGCAGGTCATGGGTTAAAGTGGATACGACATGTCCTGCAGAATGAATGGTATCTGGCTCCAAAGAAACACCTGAGCCATCCCTTTCCGAATGACCCGGCTCCAAAGAAACACCTGAGCCATCCCTTACCGAATGCCTGCTTGATTCAACCAAGGGCATACTATTAACTTGACTTAATCTTGCTTCCGCAGATGTGCAATTGACATAAAGCTCAACAACTTGCCCACACGTCTTCTCGAATATCATCTTTCATCCCCTGTCTTCATAAATAGGAATGAGTTGAAAATATTGTGGTCCAGGATTTCCGATATCAAACCGAGCTTGGATACTCATTGCACAATGATCCTCAGTGTACCCAAGGGCTTGAAAAATTTCATTTCTGACTTCTTCAAAGGTTGTAGCCTCAAGTGCCGGAAAAGTTATTTTTGGAGGAATGTTATATTCCACACCCTTATCTCCATGTTGTATTCTACCATCGATATATACTAGAACAATAATTATTTTTCTCTCAGCCATCTGTGCAAAACAAACTCAATAATTTAACAAATCAAGTTAAATAATTAGTAGTTAGATAATAATCTGTACATATATCTCCTAATTTAATTTAACAAAGCAAGTTATATAACTACTAGTTAAATAATAATCTATTCATATATCCTTCAGATTTTTTTAAAAAAATGTTGATTTGCTTATTAAAAATATCAACGAATAGCTTATAATTTAAGAACATGCACTACCGATCCAACTACACAAACATGTCAATATATATAAAGTACGTATGAACACAATGTATACAGCAGGCAGCAGCTGATCAATGCTAATTAGCTAAACGTATGCATGGGCACCTGTTGCCTAGCTCCCACAGAAAGACGTACATATGCAGATCAATGTGAAAGACATAATGCATGCATGTCTTGCAGTTCACCTATTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAATATTATTAATTATTATAAATAAAAAATTCGGCCAATT]

[+] EMBL AK072652             [TAGATGCTCTTTTGAATCAAAAGTCTTTGCTTCTGCTAGTGGATTGTCAAATTGATTCTTGCATCCAAAGAAATTCTCATCTGCTGTTGTCTTCCTTAGTACAGATATATCACTGAATGCTTTTATAGCATCTTGTCCAGATGCACGCATCAAAGGAAAGGCATTGACAGAATGAGTAACACGTGGTTCTGAAATATCATCATCTGAACTATTGTTAAGGGCATCATCAGAATCATGCTCGTTACCACTATCTTGTCCATTCTCTGCAAGATCTGTCTCCTCACCTACATATGTGTCTTCAGCAATATTGGCATCACCTATAGTTGTCGTTGTTTCGTATTCCATGTTACCTTGGTTGGTTTGTGGAGACAACGGCAATGCTGTTGAATGCAGGTCATGGGTTAAAGTGGATACGACATGTCCTGCAGAATGAATGGTATCTGGCTCCAAAGAAACACCTGAGCCATCCCTTTCCGAATGACCCGGCTCCAAAGAAACACCTGAGCCATCCCTTACCGAATGCCTGCTTGATTCAACCAAGGGCATACTATTAACTTGACTTAATCTTGCTTCCGCAGATGTGCAATTGACATAAAGCTCAACAACTTGCCCACACGTCTTCTCGAATATCATCTTTCATCCCCTGTCTTCATAAATAGGAATGAGTTGAAAATATTGTGGTCCAGGATTTCCGATATCAAACCGAGCTTGGATACTCATTGCACAATGATCCTCAGTGTACCCAAGGGCTTGAAAAATTTCATTTCTGACTTCTTCAAAGGTTGTAGCCTCAAGTGCCGGAAAAGTTATTTTTGGAGGAATGTTATATTCCACACCCTTATCTCCATGTTGTATTCTACCATCGATATATACTAGAACAATAATTATTTTTCTCTCAGCCATCTGTGCAAAACAAACTCAATAATTTAACAAATCAAGTTAAATAATTAGTAGTTAGATAATAATCTGTACATATATCTCCTAATTTAATTTAACAAAGCAAGTTATATAACTACTAGTTAAATAATAATCTATTCATATATCCTTCAGATTTTTTTAAAAAAATGTTGATTTGCTTATTAAAAATATCAACGAATAGCTTATAATTTAAGAACATGCACTACCGATCCAACTACACAAACATGTCAATATATATAAAGTACGTATGAACACAATGTATACAGCAGGCAGCAGCTGATCAATGCTAATTAGCTAAACGTATGCATGGGCACCTGTTGCCTAGCTCCCACAGAAAGACGTACATATGCAGATCAATGTGAAAGACATAATGCATGCATGTCTTGCAGTTCACCTATTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAATATTATTAATTATTATAAATAAAAAATTCGGCCAATT]


>consensus_10712#0 TAGATGCTCTTTTGAATCAAAAGTCTTTGCTTCTGCTAGTGGATTGTCAAATTGATTCTT GCATCCAAAGAAATTCTCATCTGCTGTTGTCTTCCTTAGTACAGATATATCACTGAATGC TTTTATAGCATCTTGTCCAGATGCACGCATCAAAGGAAAGGCATTGACAGAATGAGTAAC ACGTGGTTCTGAAATATCATCATCTGAACTATTGTTAAGGGCATCATCAGAATCATGCTC GTTACCACTATCTTGTCCATTCTCTGCAAGATCTGTCTCCTCACCTACATATGTGTCTTC AGCAATATTGGCATCACCTATAGTTGTCGTTGTTTCGTATTCCATGTTACCTTGGTTGGT TTGTGGAGACAACGGCAATGCTGTTGAATGCAGGTCATGGGTTAAAGTGGATACGACATG TCCTGCAGAATGAATGGTATCTGGCTCCAAAGAAACACCTGAGCCATCCCTTTCCGAATG ACCCGGCTCCAAAGAAACACCTGAGCCATCCCTTACCGAATGCCTGCTTGATTCAACCAA GGGCATACTATTAACTTGACTTAATCTTGCTTCCGCAGATGTGCAATTGACATAAAGCTC AACAACTTGCCCACACGTCTTCTCGAATATCATCTTTCATCCCCTGTCTTCATAAATAGG AATGAGTTGAAAATATTGTGGTCCAGGATTTCCGATATCAAACCGAGCTTGGATACTCAT TGCACAATGATCCTCAGTGTACCCAAGGGCTTGAAAAATTTCATTTCTGACTTCTTCAAA GGTTGTAGCCTCAAGTGCCGGAAAAGTTATTTTTGGAGGAATGTTATATTCCACACCCTT ATCTCCATGTTGTATTCTACCATCGATATATACTAGAACAATAATTATTTTTCTCTCAGC CATCTGTGCAAAACAAACTCAATAATTTAACAAATCAAGTTAAATAATTAGTAGTTAGAT AATAATCTGTACATATATCTCCTAATTTAATTTAACAAAGCAAGTTATATAACTACTAGT TAAATAATAATCTATTCATATATCCTTCAGATTTTTTTAAAAAAATGTTGATTTGCTTAT TAAAAATATCAACGAATAGCTTATAATTTAAGAACATGCACTACCGATCCAACTACACAA ACATGTCAATATATATAAAGTACGTATGAACACAATGTATACAGCAGGCAGCAGCTGATC AATGCTAATTAGCTAAACGTATGCATGGGCACCTGTTGCCTAGCTCCCACAGAAAGACGT ACATATGCAGATCAATGTGAAAGACATAATGCATGCATGTCTTGCAGTTCACCTATTGCC GGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTG AGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGACAGTACGGCGTGGTTTGCAGGG TGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCT AGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGG GTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTT TGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTA TTTAATTTAAATATTATTAATTATTATAAATAAAAAATTCGGCCAATT



consensusID : consensus_10712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1376
fasta sequence
                              [TCAGGATTGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGGCGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCATCACCAGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGGGAACACTAACTTATGCATTGAAGATTCAGTTTCATATATGGAGGAAAATCGTAGTTGGATGTATAGAGAATGAAAAGGTAGGTTATACAGCCAAGTATGGGCTACTGGGGTAGATCATTTTGTAGAGCATGCGTTTTCATTACCTGAGGCATTGAGTGATGGGACATCAAGGTGTCCATGTAGGAAAATGTGTGTGCTCGCACAAGAGAAAGAGAGAAGAGGTAACAATGCACTTGCTGCAGAATGGTTTCCAGCAAGGATATTATGCATGTACTGGAGACACCAAGTTTCAGGAAGATGTCAATGCGTGGCAAGGAGAATCGGTTGGTAGGAGGTAACACTGTATACCATCGTAGCGGATCACGTGGCTTATTAGGGACTCGACAATTCCTAAAGACCAAAAATGGAGTTGATCCTGGGCAGGCAGGAGCATGGCATCATCAACACCGAATGGAACATGACGGGCCAAGAGGGCTCTGCTGTGAGAAAACTGCTATTTTTTAGGCAAAATATGATAATGCAATGAGAGAGAAATATGATGAGGATTGGCTAGCGAAGAATCTAGACATAGATCATGCAGTTGTACATGACATATCAGGCCTGCCCCATGGGAGATTTGCAAATGGGAGATAGTGTAGTCAGTACAATTGACATAAGGGCATTGTATTGTAACAAATCTCCTGGGAAGTCGTCATCAAGCTCAATGTATGGTGCATCAAGCTCCTCAAAAAGAAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGCTCATGATGATGTTAGAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATGATGTTATGCATGGCTGAAGTCATATTCTTGACATTCGTTCCAACTGATTAGCTTTAGATTCATTAAGAAAACTATTTGTTTTAAGCCAAATGTTTGGCTAATTGTACTATACTGATCGAGTAGTGGAAAACTCTAGAAAACTCACAGTATTTGTTTGGTCATGAATCTTGTTCATATTTACTATTAAACTACATTACTA]

[+] EMBL AK073343             [TCAGGATTGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGGCGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCATCACCAGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGGGAACACTAACTTATGCATTGAAGATTCAGTTTCATATATGGAGGAAAATCGTAGTTGGATGTATAGAGAATGAAAAGGTAGGTTATACAGCCAAGTATGGGCTACTGGGGTAGATCATTTTGTAGAGCATGCGTTTTCATTACCTGAGGCATTGAGTGATGGGACATCAAGGTGTCCATGTAGGAAAATGTGTGTGCTCGCACAAGAGAAAGAGAGAAGAGGTAACAATGCACTTGCTGCAGAATGGTTTCCAGCAAGGATATTATGCATGTACTGGAGACACCAAGTTTCAGGAAGATGTCAATGCGTGGCAAGGAGAATCGGTTGGTAGGAGGTAACACTGTATACCATCGTAGCGGATCACGTGGCTTATTAGGGACTCGACAATTCCTAAAGACCAAAAATGGAGTTGATCCTGGGCAGGCAGGAGCATGGCATCATCAACACCGAATGGAACATGACGGGCCAAGAGGGCTCTGCTGTGAGAAAACTGCTATTTTTTAGGCAAAATATGATAATGCAATGAGAGAGAAATATGATGAGGATTGGCTAGCGAAGAATCTAGACATAGATCATGCAGTTGTACATGACATATCAGGCCTGCCCCATGGGAGATTTGCAAATGGGAGATAGTGTAGTCAGTACAATTGACATAAGGGCATTGTATTGTAACAAATCTCCTGGGAAGTCGTCATCAAGCTCAATGTATGGTGCATCAAGCTCCTCAAAAAGAAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGCTCATGATGATGTTAGAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATGATGTTATGCATGGCTGAAGTCATATTCTTGACATTCGTTCCAACTGATTAGCTTTAGATTCATTAAGAAAACTATTTGTTTTAAGCCAAATGTTTGGCTAATTGTACTATACTGATCGAGTAGTGGAAAACTCTAGAAAACTCACAGTATTTGTTTGGTCATGAATCTTGTTCATATTTACTATTAAACTACATTACTA]


>consensus_10712#1 TCAGGATTGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGGC GACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCAT CACCAGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCA CCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACC ACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGA CCTCCTTCCACCAAGCACTACCGGCTGAGAGGGAACACTAACTTATGCATTGAAGATTCA GTTTCATATATGGAGGAAAATCGTAGTTGGATGTATAGAGAATGAAAAGGTAGGTTATAC AGCCAAGTATGGGCTACTGGGGTAGATCATTTTGTAGAGCATGCGTTTTCATTACCTGAG GCATTGAGTGATGGGACATCAAGGTGTCCATGTAGGAAAATGTGTGTGCTCGCACAAGAG AAAGAGAGAAGAGGTAACAATGCACTTGCTGCAGAATGGTTTCCAGCAAGGATATTATGC ATGTACTGGAGACACCAAGTTTCAGGAAGATGTCAATGCGTGGCAAGGAGAATCGGTTGG TAGGAGGTAACACTGTATACCATCGTAGCGGATCACGTGGCTTATTAGGGACTCGACAAT TCCTAAAGACCAAAAATGGAGTTGATCCTGGGCAGGCAGGAGCATGGCATCATCAACACC GAATGGAACATGACGGGCCAAGAGGGCTCTGCTGTGAGAAAACTGCTATTTTTTAGGCAA AATATGATAATGCAATGAGAGAGAAATATGATGAGGATTGGCTAGCGAAGAATCTAGACA TAGATCATGCAGTTGTACATGACATATCAGGCCTGCCCCATGGGAGATTTGCAAATGGGA GATAGTGTAGTCAGTACAATTGACATAAGGGCATTGTATTGTAACAAATCTCCTGGGAAG TCGTCATCAAGCTCAATGTATGGTGCATCAAGCTCCTCAAAAAGAAAAGCATGTGAATTA AATCATGGAGATGGTGGTTCTGCTCATGATGATGTTAGAGACTATGGTGTTGATCATGTT GATGATAATGGAGAGTATTATGGTGACGATCATGATGATGTTATGCATGGCTGAAGTCAT ATTCTTGACATTCGTTCCAACTGATTAGCTTTAGATTCATTAAGAAAACTATTTGTTTTA AGCCAAATGTTTGGCTAATTGTACTATACTGATCGAGTAGTGGAAAACTCTAGAAAACTC ACAGTATTTGTTTGGTCATGAATCTTGTTCATATTTACTATTAAACTACATTACTA



consensusID : consensus_10712#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 755
fasta sequence
                              [GAGTAGAAAGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGGCGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCATCACCGGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACG-ACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAAAAAAATTAATTATTATAAATAAAAAATTCGGCCAAAAAA]

[+] EMBL CF291779             [GAGTAGAAAGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGGCGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCATCACCGGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACG ACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGG                                                                                                                                                                         ]
[+] EMBL AU174971             [                                                                                                                                GGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACG ACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAA                                                                                                                                                                                                                                          ]
[+] EMBL AU174970             [                                                                                                                                                                                                                                                                         CGTGACAACCTCCGTTCGCCTCCACCTAGACGTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACG ACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAAAAAAA                                  ]
[-] EMBL CF291780             [                                                                                                                                                                                                                                                                                                                              CTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGAACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAATATTATTAATTATTATAAATAAAAAATTCGGCCAAAAAA]
[+] EMBL AU058032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTA  NAA   AAAAAAAA  AAAAAAAAAAAAAAAAAA              ]


>consensus_10712#2 GAGTAGAAAGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGCGG CGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCGCCA TCACCGGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAGTC ACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGCGAC CACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGACGTCG ACCTCCTTCCACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCCGGCCGGCGAGCAGCC AACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTGAGTAATGAACAAATC CAAGGCGCCGGCGTCGACAACGACAGTACGGCGTGGTTTGCAGGGTGAAGCGTACGGATC GAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCCTAGCTAGGTCGAACAA CTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAGGGTCTGGCTGCACCAG GAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGTTTGTAAGAGCATCCAT GTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATTATTTAATTTAAAAAAA ATTAATTATTATAAATAAAAAATTCGGCCAAAAAA



consensusID : consensus_10712#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence
                              [GTGATGGTGTTGAACGTGTACTCGAGTCGTCATCAAGCTCAAATGTATGGTGCATCAAGCTCCTCAAGAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGTTCATGATGATGTTAGAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATGATGCTATGCATGGCTGAAGTCATATTCTTGACATTCATTCCACTGATTAGCTTGAGATTCATTAAGAAAGCTATTTGTATTAAGCCAAATGTTTGGCTAATTTTACTATACTGATTCAGTAGTGGAAAACTCTAGAAAACTCACATATTTGTTTGGTCCAAAA]

[+] EMBL BI805166             [GTGATGGTGTTGAACGTGTACTCGAGTCGTCATCAAGCTCAAATGTATGGTGCATCAAGCTCCTCAAGAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGTTCATGATGATGTTAGAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATGATGCTATGCATGGCTGAAGTCATATTCTTGACATTCATTCCACTGATTAGCTTGAGATTCATTAAGAAAGCTATTTGTATTAAGCCAAATGTTTGGCTAATTTTACTATACTGATTCAGTAGTGGAAAACTCTAGAAAACTCACATATTTGTTTGGTCCAAAA]


>consensus_10712#3 GTGATGGTGTTGAACGTGTACTCGAGTCGTCATCAAGCTCAAATGTATGGTGCATCAAGC TCCTCAAGAAAGCATGTGAATTAAATCATGGAGATGGTGGTTCTGTTCATGATGATGTTA GAGACTATGGTGTTGATCATGTTGATGATAATGGAGAGTATTATGGTGACGATCATGATG ATGCTATGCATGGCTGAAGTCATATTCTTGACATTCATTCCACTGATTAGCTTGAGATTC ATTAAGAAAGCTATTTGTATTAAGCCAAATGTTTGGCTAATTTTACTATACTGATTCAGT AGTGGAAAACTCTAGAAAACTCACATATTTGTTTGGTCCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10712#1      ------------------------------------------------------------
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TAGATGCTCTTTTGAATCAAAAGTCTTTGCTTCTGCTAGTGGATTGTCAAATTGATTCTT 60
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ------------------------------------------------------------
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      GCATCCAAAGAAATTCTCATCTGCTGTTGTCTTCCTTAGTACAGATATATCACTGAATGC 120
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ------------------------------------------------------------
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TTTTATAGCATCTTGTCCAGATGCACGCATCAAAGGAAAGGCATTGACAGAATGAGTAAC 180
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ------------------------------------------------------------
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      ACGTGGTTCTGAAATATCATCATCTGAACTATTGTTAAGGGCATCATCAGAATCATGCTC 240
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ------------------------------------------------------------
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      GTTACCACTATCTTGTCCATTCTCTGCAAGATCTGTCTCCTCACCTACATATGTGTCTTC 300
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ----TCAGGATTGGATCCCCACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAG 56
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      AGCAATATTGGCATCACCTATAGTTGTCGTTGTTTCGTATTCCATGTTACCTTGGTTGGT 360
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      CGGCGACACCGCCGCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCGCCTCCACTCG 116
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TTGTGGAGACAACGGCAATGCTGTTGAATGCAGGTCATGGGTTAAAGTGGATACGACATG 420
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      CCATCACCAGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCA 176
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TCCTGCAGAATGAATGGTATCTGGCTCCAAAGAAACACCTGAGCCATCCCTTTCCGAATG 480
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      GTCACCTCCGTCTGGACCTACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGCGC 236
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      ACCCGGCTCCAAAGAAACACCTGAGCCATCCCTTACCGAATGCCTGCTTGATTCAACCAA 540
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      GACCAC-CTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCGCCTCCACCTAGAC 295
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      GGGCATACTATTAACTTGACTTAATCTTGCTTCCGCAGATGTGCAATTGACATAAAGCTC 600
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      GTCGACCTCCTTCCACCAAGCACTACCGGCTGAGAGGGAACACTAACTTATGCATTGAAG 355
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      AACAACTTGCCCACACGTCTTCTCGAATATCATCTTTCATCCCCTGTCTTCATAAATAGG 660
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ATTCAGTTTCATATATGGAGGAAAATCGTAGTTGGATGTATAGAGAATGAAAAGGTAGGT 415
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      AATGAGTTGAAAATATTGTGGTCCAGGATTTCCGATATCAAACCGAGCTTGGATACTCAT 720
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      TATACAGCCAAGTATGGGCTACT--GGGGTAGATCATTTTGTAGAGCATGCGTTTTCATT 473
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TGCACAATGATCCTCAGTGTACCCAAGGGCTTGAAAAATTTCATTTCTGACTTCTTCAAA 780
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      ACCTGAGGCATTGAGTGATGGGACATCAAGGTGTCCATGTAGGAAAATGTGTGTGCTCGC 533
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      GGTTGTAGCCTCAAGTGCCGGAAAAGTTATTTTTGGAGGAATGTTATATTCCACACCCTT 840
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      A-CAAGAGAAAGAGAGAAGAGGTAACAATGCACTTGCTGCAGAATGGTTTCCAGCAAGGA 592
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      ATCTCCATGTTGTATTCTACCATCGATATATACTAGAACAATAATTATTTTTCTCTCAGC 900
consensus_10712#2      ------------------------------------------------------------
                                                                                   

consensus_10712#1      TATTATGCATGTACTGGAGACACCAAGTTTCAGGAAGATGTCAATGCGTGGCAAGGAGAA 652
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      CATCTGTGCAAAACAAACTCAATAATTTAACAAATCAAGTTAAATAATTAGTAGTTAGAT 960
consensus_10712#2      ----------------------------------------------------GAGTAGAA 8
                                                                                   

consensus_10712#1      TCGGTTGGTAGGAGGTAACACTGTATACCATCGTAGCGGATCACGTGGCTTATTAGGGAC 712
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      AATAATCTGTACATATATCTCCTAATTTAATTTAACAAAGCAAGTTATATAACTACTAGT 1020
consensus_10712#2      AGGATCCC---CACGCGGCCACGCCTCCACATCCACAAGCCATCCCCAGAAGC----GGC 61
                                                                                   

consensus_10712#1      TCGACAATTCCTAAAGACCAAA--AATGGAGTTGATCCTGGGCAGGCAGGAGCATGGCAT 770
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TAAATAATAATCTATTCATATATCCTTCAGATTTTTTTAAAAAAATGTTGATTTGCTTAT 1080
consensus_10712#2      GACACCGCCGCCTCCGCCTCCG-CCTCCACCTCCACCTCCACCTCCGCC--TCCACTCGC 118
                                                                                   

consensus_10712#1      CATCAACACCGAATGGAACATGACGGGCCAAGAGGGCTCTGCTGTGAGAAAACTGCTATT 830
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      TAAAAATATCAACGAATAGCTTATAATTTAAGAACATGCACTACCGATCCAACTACACAA 1140
consensus_10712#2      CATCACCGGTGGAGGGAACGCGTCGCCCTCAGCTCCGCCTCGACAAGCCCCGCCCTCCAG 178
                                                                                   

consensus_10712#1      TTTTAGGCAAAATATGATAATGCAATGAGAGAGAAATATGATGAGGATTGGCTAGCGAAG 890
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      ACATGTCAATATATATAAAGTACGTATGAACACAATGTATACAGCAGGCAGCAGCTGATC 1200
consensus_10712#2      TCACCTCCGTCTGGACC---TACCTCACCCTCCAATCGCCATCGCTGGCGGCGGCGACGC 235
                                                                                   

consensus_10712#1      AATCTAGACATAGATCATGCAGTTGTACATGACATATCAGGCCTGCCCCATGGGAGATTT 950
consensus_10712#3      ------------------------------------------------------------
consensus_10712#0      AATGCTAATTAGCTAAACGTATGCATGGGCACCTGTTGCCTAGCTCCCACAGAAAGACGT 1260
consensus_10712#2      G----CGACCACCTCCACACTGGTAGCGCCCACTCGTGACAACCTCCGTTCG-----CCT 286
                                                                                   

consensus_10712#1      GCAAATGGGAGATAGTGTAGTCAGTACAATTGACATAAGGGCATTGTATTGTAACAAATC 1010
consensus_10712#3      ------------------------------------------GTGATGGTGTTGAACGTG 18
consensus_10712#0      ACATATGCAGATCAATGTGAAAGACATAATGCATGCATGTCTTGCAGTTCACCTATTGCC 1320
consensus_10712#2      CCACCTAGACGTCGACCTCCTTC-CACCAAGCACTACCGGCTGAGAGTTCACCTGTTGCC 345
                                                                                   

consensus_10712#1      TCCTGGGAAGTCGTCATCAAGCTCAA-TGT-ATGGTGCATCAAGCTCCTCAAAAAGAAAA 1068
consensus_10712#3      TACTCG--AGTCGTCATCAAGCTCAAATGT-ATGGTGCATCAAGCTCCTCAAGAA----A 71
consensus_10712#0      GGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTG 1380
consensus_10712#2      GGCCGGCGAGCAGCCAACGAACTTGCCGCTGAAGACGCCGTGGCTGGATTGATGGCGCTG 405
                         *  *  **  * ** * * **      * * *  **          *  *        

consensus_10712#1      GCATGTGAATTAAATCATGGAGATGGTGGTTCTGCTCATGATGATGTTAGAGACTATGGT 1128
consensus_10712#3      GCATGTGAATTAAATCATGGAGATGGTGGTTCTGTTCATGATGATGTTAGAGACTATGGT 131
consensus_10712#0      AGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGACAGT-ACGGCGTGGTTTGCAGG 1439
consensus_10712#2      AGTAATGAACAAATCCAAGGCGCCGGCGTCGACAACGACAGT-ACGGCGTGGTTTGCAGG 464
                            ****  **  ** ** *  ** *         *   * * *     *  *   * 

consensus_10712#1      GTTGATCATGTTGAT-GATAATGGAGAG-----TATTATGGTGACGATCATGATGATGTT 1182
consensus_10712#3      GTTGATCATGTTGAT-GATAATGGAGAG-----TATTATGGTGACGATCATGATGATGCT 185
consensus_10712#0      GTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCC 1499
consensus_10712#2      GTGAAGCGTACGGATCGAAGGCGAACAGGCGCATACGACGATGCCGGCGATCCCTAACCC 524
                       **  * * *   *** **    * * **     **  * * ** **   **    *    

consensus_10712#1      ATGCATGGCTGAA--GTCATATTCTTGACATTCGTTCCAACTGATTAG------CTTTAG 1234
consensus_10712#3      ATGCATGGCTGAA--GTCATATTCTTGACATTCATTCCA-CTGATTAG------CTTGAG 236
consensus_10712#0      TAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAG 1559
consensus_10712#2      TAGCTAGGTCGAACAACTTTTGTTTCGATACTTCTCTTAGCGTATCGGTAGCGTCTTGAG 584
                         **  **  ***      *  * * ** * *  *   * *  **  *      *** **

consensus_10712#1      ATTC-------ATTAAGAAA------ACTATTTGTTTTAAGCCAAATGTTTGG---CTAA 1278
consensus_10712#3      ATTC-------ATTAAGAAA------GCTATTTGTATTAAGCCAAATGTTTGG---CTAA 280
consensus_10712#0      GGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGT 1619
consensus_10712#2      GGTCTGGCTGCACCAGGAAGATGGACGCTGTTTGAAAGAGCTTCCAGATCTGGACGCTGT 644
                         **       *  * ***        ** ****    *      *  * ***   **  

consensus_10712#1      TTGTAC---------TATACTGATCGAGTAGTGGAAAACTCTAGAAAACTCACAGTATTT 1329
consensus_10712#3      TTTTAC---------TATACTGATTCAGTAGTGGAAAACTCTAGAAAACTCACA-TATTT 330
consensus_10712#0      TTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATT 1679
consensus_10712#2      TTGTAAGAGCATCCATGTCTCCATCGTATTTTGGTTAATCTTCTCAAAGAATTACTAATT 704
                       ** **          * *    **    *  ***  **   *   ***     * ** **

consensus_10712#1      GTTTGGTCATGAATCTTGTTCATATTTACTATTAAACTACATTACTA----- 1376
consensus_10712#3      GTTTGGTCCAAAA--------------------------------------- 343
consensus_10712#0      ATTTAATT-TAAATATTATTAATTATTATAAATAAAAAATTCGGCCAATT-- 1728
consensus_10712#2      ATTTAATT-TAAAAAAAATTAATTATTATAAATAAAAAATTCGGCCAAAAAA 755
                        ***  *    **                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)