|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1700 fasta sequence
[CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC-TCACAGATTACTGATGCTGTGGTTATCGCAAG-ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAG-AGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTATGATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCTAATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAGTTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACTATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACTGCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAGCATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATTGATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGAAGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAGATGTGATGTGTG]
[+] EMBL AK070571 [CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAG AGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTATGATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCTAATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAGTTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACTATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACTGCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAGCATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATTGATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGAAGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAGATGTGATGTGTG]
[+] EMBL OSC0441 [ TCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTNATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGGCCCTGCTGGTCTAAACCAAGGTCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAGNAT TTTAGGTGCAA ANTTGTGCTT ]
[+] EMBL C74846 [ TCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTANGTGCAA ACTT ]
[+] EMBL AU031134 [ GATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATCTTCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAGTAGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACA ]
[+] EMBL AU088722 [ AGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAaaaaa ]
[+] EMBL CA766640 [ CATTTCC AACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATCCATACCTCGCAAGAGCACTAGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTTCTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCGTTTA TGTTACTTAAATGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTG AAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCA ]
[+] EMBL CB096443 [ GAAATCCGGGGATTCATACCTTGCAAGAGCACTAGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTGGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTCCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTCGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTA TGTTACTTAAATGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTG AAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCA ]
consensusID : consensus_10714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[GCGAGTTCCTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAGCGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNTCGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031135 [GCGAGTTCCTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAGCGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNTCGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10714#0 CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTG 60
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 CTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCG 120
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 CGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATC 180
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 AAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACA 240
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAG 300
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCA 360
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 AGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAA 420
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 TACCACATCTCACAGATTACTGATGCTGTGGTTATCGCAAGATATTTAGGTGCAACACTT 480
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GTGCTTCCAGAAATTAGAGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTAT 540
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCT 600
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 AATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAG 660
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 TTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACT 720
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 ATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACT 780
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAG 840
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 CATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATT 900
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGA 960
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 AGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCT 1020
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAG 1080
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 GCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTC 1140
consensus_10714#1 ----------------------------------------------------GCGAGTTC 8
********
consensus_10714#0 CTGAAAT-CCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAG 1199
consensus_10714#1 CTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAG 68
******* ************ ***************** *********************
consensus_10714#0 CGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGAT 1259
consensus_10714#1 CGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNT 128
**** ************** ************************************** *
consensus_10714#0 CGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGC 1319
consensus_10714#1 CGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGC 188
********** *************************************************
consensus_10714#0 TTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTG 1379
consensus_10714#1 TTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTG 248
************************************************************
consensus_10714#0 CTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGA 1439
consensus_10714#1 CTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGA 308
************************************************************
consensus_10714#0 GTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGAT 1499
consensus_10714#1 GTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGAT 368
************************************************************
consensus_10714#0 GTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGA 1559
consensus_10714#1 GTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAA 428
************************************************ **** * * *
consensus_10714#0 AGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGT 1619
consensus_10714#1 AAAAAAAAA-----------AAAAAAAA-------------------------------- 445
* * * ** ********
consensus_10714#0 GTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTT 1679
consensus_10714#1 ------------------------------------------------------------
consensus_10714#0 CCATAGAAGATGTGATGTGTG 1700
consensus_10714#1 ---------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||