These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1217 fasta sequence [GATGGTCGAACACAGCTAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCACCACCTCCAGCAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATGCCGGCGATGATGGCGGACGAGCAGTACATGGACCTGGGCGGTGGCGGGGCGGCGGCGGCGCCGGGGAGGGGCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT-CCTCGACTGATCTGCCGTCTCCCTT-GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCACTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAAACTAGTTTTATATCTAAAAA] [+] EMBL AY224440 [GATGGTCGAACACAGCTAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCACCACCTCCAGCAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATGCCGGCGATGATGGCGGACGAGCAGTACATGGACCTGGGCGGTGGCGGGGCGGCGGCGGCGCCGGGGAGGGGCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGC ] [+] EMBL AK109177 [ CAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATC ] [+] EMBL AU057927 [ TAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTTGGGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGT ] [+] EMBL CA752603 [ AGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTA ATTGGGGTTGCAAGAAGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGG ] [+] EMBL AU057928 [ CGTCTCCCTCGACTGATCTGCCNTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCACTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAAACTAGTTTTATATCTAAAAA] consensusID : consensus_10719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 945 fasta sequence [CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTATTGGGTCTATAT] [+] EMBL AK063685 [CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGT ] [+] EMBL CB652986 [ TCGACCCATTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCG ] [-] EMBL CB652987 [ AAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGTTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTATTGGGTCTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10719#0 ----------------------------------------GATGGTCGA----ACACAGC 16 consensus_10719#1 CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTC 60 *** **** ** * consensus_10719#0 TAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCAC-------CACCTCCAG 69 consensus_10719#1 CTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCC-G 119 *** **** * ***** * * *** * * ** ** * consensus_10719#0 CAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATG 129 consensus_10719#1 CAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGG 179 **** **** ** ** * ** * *** ****** * ***** * * * consensus_10719#0 CCGGCGATGATGGCGGACGAGCAGTACATGGAC----CTGGGCGGTGGCGGGGCGGCGGC 185 consensus_10719#1 CAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGC 239 * * * ** **** ** ** ** ** * ***** * * * **** **** consensus_10719#0 GGCGCCGGGGAGGG-----GCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAG 240 consensus_10719#1 GACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAG 299 * ** *** * ** **** * ********************************** consensus_10719#0 ATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAG 300 consensus_10719#1 GTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAG 359 * ************ * * *********** * ************** ** ****** consensus_10719#0 GCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAAC 360 consensus_10719#1 GCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAAC 419 ************** ***** ** *********** ************************ consensus_10719#0 AAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAG 420 consensus_10719#1 AAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAG 479 ******** ****************** ******************* ****** ** ** consensus_10719#0 TACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTC 480 consensus_10719#1 TACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGAC 539 *************** ************* **** *** *********** *** * * * consensus_10719#0 CAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGT 540 consensus_10719#1 CAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGAC 599 *** ** * ***** ** * ** ***** ** *** * ** ******** * * * consensus_10719#0 GCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGAC 600 consensus_10719#1 G--GCGGCGGCG-CCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGC 656 * ** ** ** * * * * * * * *** * ** * * * * consensus_10719#0 GACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGC 660 consensus_10719#1 AGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCT------CGCGGTGCCGG----- 705 * ** * * * * * * * ** * * ***** ** * ***** consensus_10719#0 TGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAG 720 consensus_10719#1 ----TGGTGGACGTCTCGGAGGACGGCTCGGCGGCG--TGCGGCGG-GTCGTCGTACGAG 758 ** * * ** * ** * ** * ** ***** * * *** * **** * ** consensus_10719#0 TGCGACGACCAGCTTGACTAC---GATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACG 777 consensus_10719#1 TACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATG 818 * **** * ** ** ****** * * *** * * ** ** * ******* ** * consensus_10719#0 CCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAG 837 consensus_10719#1 CCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATC-----AT 873 ***** ********* ****** * ** ** ***** ** ** ** *** * consensus_10719#0 AGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACG 897 consensus_10719#1 GCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTA 933 ** * ** * * *** ** * * * * ** ** * * * * * consensus_10719#0 TCTCCTCGACTGATCTGCCGTCTCCCTTGGACAGAGAGGGAAAAGAGGGCCGTGGCAATG 957 consensus_10719#1 TTGGGTCTATAT------------------------------------------------ 945 * ** * consensus_10719#0 ACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGG 1017 consensus_10719#1 ------------------------------------------------------------ consensus_10719#0 TGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGA 1077 consensus_10719#1 ------------------------------------------------------------ consensus_10719#0 GAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCA 1137 consensus_10719#1 ------------------------------------------------------------ consensus_10719#0 CTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAA 1197 consensus_10719#1 ------------------------------------------------------------ consensus_10719#0 ACTAGTTTTATATCTAAAAA 1217 consensus_10719#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||