These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3437 fasta sequence [AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGACAGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCAGCGATAAACTAGCAACAATCCGCAAGGAGAGGAGGAAGAACATTGATATGTTAGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCCTGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCTGGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCCAAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTGAAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGATCAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATACGCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACTGAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGAACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGAACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGATAATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTTGGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCCATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAGAGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTCGCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACAAGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTCAGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGCCATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGAGAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGGCAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGTGCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCAAGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGAAGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGATGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGAGTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAAGAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTCATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTCATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGCTAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGCTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATTTAAAATTTAAAAAAAAAAAAAAAA] [+] EMBL AK120361 [AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGACAGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCAGCGATAAACTAGCAACAATCCGCAAGGAGAGGAGGAAGAACATTGATATGTTAGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCCTGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCTGGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCCAAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTGAAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGATCAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATACGCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACTGAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGAACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGAACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGATAATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTTGGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCCATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAGAGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTCGCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACAAGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTCAGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGCCATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGAGAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGGCAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGTGCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCAAGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGAAGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGATGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGAGTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAAGAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTCATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTCATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGCTAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAA ] [+] EMBL CA766463 [ AGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGNTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGNTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGNTCTGCAGCTGAAAAANATTGTCCGGTT ] [-] EMBL CA758981 [ AGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACNGGAGCTGTCAAGGAGTGTGCCCTTGGTATACCCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGNTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTTTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGCGAGTACGAATTCTTGCATGTGTTACCTCTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTTTGCAGCTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATTTAAAATTTAAAAAAAAAAAAAAAA] [-] EMBL CB639007 [ TGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATG ] [+] EMBL BI813570 [ cacgcGTCCGGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATAC ATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAaaaaaaaaa ] consensusID : consensus_10722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGGTGAGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCTAAACTGAATGCATAATTTCGAGTTAATGATTGTAACTGTAAGTGTAACTTTGATTAGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG] [+] EMBL AK107890 [AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGGTGAGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCTAAACTGAATGCATAATTTCGAGTTAATGATTGTAACTGTAAGTGTAACTTTGATTAGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG] consensusID : consensus_10722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GGGGGGGAGACTTCCCCCCGCTTCTACCACCTCCACCCCCGTGGCCGCCGCTCTATAACTATTTCCATCCCCCCGGCTGCATTGAATTCAGCACACGCAACACTGTCACTTCTTGACATAACTTGTGCAACGGATACCAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAGGAGAGGACCGAACAACATTGATATGTTACAATCTCTGTTGAACATACATCCACAAAACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCTAGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA] [+] EMBL AF061761 [GGGGGGGAGACTTCCCCCCGCTTCTACCACCTCCACCCCCGTGGCCGCCGCTCTATAACTATTTCCATCCCCCCGGCTGCATTGAATTCAGCACACGCAACACTGTCACTTCTTGACATAACTTGTGCAACGGATACCAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAGGAGAGGACCGAACAACATTGATATGTTACAATCTCTGTTGAACATACATCCACAAAACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCTAGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA] consensusID : consensus_10722#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [GAGTAGAAAATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA] [+] EMBL CF335810 [GAGTAGAAAATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10722#0 AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACT 60 consensus_10722#1 ---------AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACT 51 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCC 120 consensus_10722#1 TTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCC 111 consensus_10722#2 --------------GGGGGGGAGACTTCCCCCCGCTTCTACCACCTC------------C 34 consensus_10722#3 ---------------GAGTAGAAAATACAATGCACAATGGTGGCATT------------C 33 * ** * * * * * consensus_10722#0 GCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTC-TTCCAGTCTCCGTGGCTATCCC 179 consensus_10722#1 GCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTC-TTCCAGTCTCCGTGGCTATCCC 170 consensus_10722#2 ACCCCCGTGGCCGCCGCTCTATAACT--ATTTCCATC-CCCCCGGCTGCATTGAATTCAG 91 consensus_10722#3 AAGATTA-GCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGG 92 * * * * * * ** * * consensus_10722#0 CTCTTCTAGGGTT-TCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCAC 238 consensus_10722#1 CTCTTCTAGGGTT-TCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCAC 229 consensus_10722#2 CACACGCAACACTGTCACTTCTTGACA-TAACTTGTGCAACGGATA-CCAGTTTTGCCTT 149 consensus_10722#3 CAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGT 152 * * * * * ** consensus_10722#0 GCCT-CAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCG 297 consensus_10722#1 GCCT-CAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCG 288 consensus_10722#2 GATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAG 209 consensus_10722#3 ACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAA 212 * * * * * * consensus_10722#0 GCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGC 357 consensus_10722#1 GCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGC 348 consensus_10722#2 GAGAGGACC----GAACAACATTGATATGT-TACAATCTCTGTTGAACATACATCCACAA 264 consensus_10722#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA 272 * * * * * consensus_10722#0 GGCGTGTGCGCGCGGCTGGCCGGGTTCGCCT-CCACCGCCGCGGGGCGCGCCGCCTGCGG 416 consensus_10722#1 GGCGTGTGCGCGCGGCTGGCCGGGTTCGCCT-CCACCGCCGCGGGGCGCGCCGCCTGCGG 407 consensus_10722#2 AACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCT 324 consensus_10722#3 AAAAA------------------------------------------------------- 277 consensus_10722#0 AGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGAC 476 consensus_10722#1 AGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGAC 467 consensus_10722#2 AGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA---------------------- 362 consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGC 536 consensus_10722#1 GGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGC 527 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGG 596 consensus_10722#1 CGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGG 587 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGAC 656 consensus_10722#1 GCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGAC 647 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGAC 716 consensus_10722#1 ACCAGATGGAAGGAGGTG-AGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCT 706 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATA-CTCTTTCTGTGGTCCTTGATC 775 consensus_10722#1 AAACTGAATGCATAATTTCGAGTT----AATGATTGTAACTGTAAGTGTAA-CTTTGATT 761 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGGCCAGCGATAAACTAGCAACAATCCGCAA--GGAGAGGAGGAAGAACATTGATATGTT 833 consensus_10722#1 AGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG------- 814 consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCC 893 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCT 953 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCC 1013 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTG 1073 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGAT 1133 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATAC 1193 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACT 1253 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGA 1313 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGA 1373 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGAT 1433 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTT 1493 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCC 1553 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAG 1613 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTC 1673 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACA 1733 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTC 1793 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGC 1853 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGA 1913 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGG 1973 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGT 2033 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCA 2093 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGA 2153 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGA 2213 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGA 2273 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAA 2333 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTC 2393 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTC 2453 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 ATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGC 2513 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAA 2573 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGC 2633 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCA 2693 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 AGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCG 2753 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAG 2813 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCT 2873 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTA 2933 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGG 2993 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCA 3053 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGG 3113 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 CCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCA 3173 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCAT 3233 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCC 3293 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGCTGAAAAAGATTGTCCGGTTT 3353 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 GTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATT 3413 consensus_10722#1 ------------------------------------------------------------ consensus_10722#2 ------------------------------------------------------------ consensus_10722#3 ------------------------------------------------------------ consensus_10722#0 TAAAATTTAAAAAAAAAAAAAAAA 3437 consensus_10722#1 ------------------------ consensus_10722#2 ------------------------ consensus_10722#3 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||