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Oryza sativa
cluster # 10725 cluster # 10725       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10725#0 length = 1109 sequences # 8  

consensusID : consensus_10725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1109
fasta sequence
                              [ACGAGAAAAGCCCCCCCATCCGCCTCCTCCTCCTCCCCCAAATTCCTCTGCTTCCCCCGGCGGCAAGACCGAAGCCTCGCCACCATCCGCGGCGGCCGCAATGGCGCTCACC-TCCCAGAGCCTCTTCTTCTCCCCGCTGGCCGCCGGCCCATCCCGGAGAGTCCGGGGGC-GGGGCC-GCTCCACCTCCGTGTCAGCCGCCGCCTCCGCCTCGTCGCACAACTCGCAGCCCCACGGCCACCCCCAACAACCCCTCGCCGTCGCGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAACCTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCCTCTGGTGC-ATTCCTTCTCGCGTCATCTGGTGGCGGGTTCGGGGGCGGCGCCGGGGGTCCTCTCGGCGGTGGAGGCGGTGGATGGGGCGCCGGAGGAGGAGGAGGTGGTG-GTGGTGGTGGCGGCGGCGGCGGGTTCTGGTCGCGGATCTTCTCCGGCGGCGCGGCGCACGCGGATGAGAAGTCGTCGGGGGATTGGGACCCGCACGGGCTCCCGGCAAACATCAACGTGCCGATGACGAAGCTGAGCGGGCTGAAGAGGTACAAGATCTCCGAGCTCAAGTTCTTCGACCGCGCCGCGGGAGGGGGAGGCGCGTTCACGGGGCCCGAGGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCTTCTGAAGGAGCTCGAGACGCTCGTGTCCTGTGGCATGTTCGAGAGGGTCGACCTCGAGGGGAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTGTCTTTTGTCGAGAGCGTGTGGAGCGCTGCTAAGCAGTTCAAGTGCATCAATGTGGGGCTAATGTCGCAGTCGGGCCAGGTTGACTTCGACCAGGACATGACAGAGAGGGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGATTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGAGGTGCTAGGAATGATGAAGAAGCAGGAGAAGGTGAGCGCTAGGCTCCTGCAGAGGATCAGGGACCATGTCCAGAAATGGTACCACAATG]

[+] EMBL AK120241             [ACGAGAAAAGCCCCCCCATCCGCCTCCTCCTCCTCCCCCAAATTCCTCTGCTTCCCCCGGCGGCAAGACCGAAGCCTCGCCACCATCCGCGGCGGCCGCAATGGCGCTCACC TCCCAGAGCCTCTTCTTCTCCCCGCTGGCCGCCGGCCCATCCCGGAGAGTCCGGGGGC GGGGCC GCTCCACCTCCGTGTCAGCCGCCGCCTCCGCCTCGTCGCACAACTCGCAGCCCCACGGCCACCCCCAACAACCCCTCGCCGTCGCGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAACCTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCCTCTGGTGCAATTCCTTCTCGCGTCATCTGGTGGCGGGTTCGGGGGCGGCGCCGGGGGTCCTCTCGGCGGTGGAGGCGGTGGATGGGGCGCCGGAGGAGGAGGAGGTGGTG GTGGTGGTGGCGGCGGCGGCGGGTTCTGGTCGCGGATCTTCTCCGGCGGCGCGGCGCACGCGGATGAGAAGTCGTCGGGGGATTGGGACCCGCACGGGCTCCCGGCAAACATCAACGTGCCGATGACGAAGCTGAGCGGGCTGAAGAGGTACAAGATCTCCGAGCTCAAGTTCTTCGACCGCGCCGCGGGAGGGGGAGGCGCGTTCACGGGGCCCGAGGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCTTCTGAAGGAGCTCGAGACGCTCGTGTCCTGTGGCATGTTCGAGAGGGTCGACCTCGAGGGGAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTGTCTTTTGTCGAGAGCGTGTGGAGCGCTGCTAAGCAGTTCAAGTGCATCAATGTGGGGCTAATGTCGCAGTCGGGCCAGGTTGACTTCGACCAGGACATGACAGAGAGGGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGATTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGAGGTGCTAGGAATGATGAAGAAGCAGGAGAAGGTGAGCGCTAGGCTCCTGCAGAGGATCAGGGACCATGTCCAGAAATGGTACCACAATG]
[+] EMBL C99171               [                                                                                          tGCGGCCACAATGG GCACACCNTCCCAGAGCCTCTTCTTCTCCCCGCTGGCCGCCGG CCATCCCGGAGAGTCCGGGGGC GGGGCC GCTCCACCTCCGTGTCAGCCGCCGCCTCCGCCTCGTCGCACAACTCGCAGCCCCACGGCCACCCCCAACAACCCCTCGCCGTCGCGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAACCTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCCTCTGGTGC ATTCCTTCTCGCGTCATCTGGTGGCGGGTTCNGGGGCGGCGCCGGGGGTCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BI796375             [                                                                                                            CACC TCCCAGAGCCTCTTCTTCTCCCCGCTGGCCGCCGGCCCATCCCGGAGAGTCCGGGGGC GGGGCC GCTCCACCTCCGTGTCAGCCGCCGCCTCCGCCTCGTCGCACAACTCGCAGCCCCACGGCCACCCCCAACAACCCCTCGCCGTCGCGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAACCTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCCTCTGGTGC ATTCCTTCTCGCGTCATCTGGTGGCGGGTTCGGGGGCGGCGCCGGGGGTCCTCTCGGCGGTGGAGGCGGTGGATGGGGCGCCGGAGGAGGAGGAGGTGGTGCGTGGTGGTGGTGGCGGCGGCGGGTTCTGGTCGCGGATCTTCTCCGGCGGCGCGGCGCACGCGGATGAGAAGTCGTCGGGGGATTGGGACCCGCACGGGCTCCCGGCAAACATCAACGTGCCGCTGACGAAGCTGAGCGGGCTGAAGAGGTACAAGATCTCCGAGCTCAAGTTCTTCGA CGCGCCGCGGGAGGGGGAGGCGCG TCACGGGACCCGAGGATTCCTTCTTCGAGATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU176431             [                                                                                                                                                            GGANAGTCCGGGGGCGGGGGCCGGTTCCACCTCCGNGTCAGCCGCCGCCTCCGCCTNGTCGCACAACTCGCAGCCCCACGGCCACCCCCAACAACCCCTCGCCGTCGNGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAACCTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB645936             [                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCGGAGGAGGAGGAGGTGGTG GTGGTGGTGGCGGCGGCGGCGGGTTCTGGTCGCGGATCTTCTCCGGCGGCGCGGCGCACGCGGATGAGAAGTCGTCGGGGGATTGGGACCCGCACGGGCTCCCGGCAAACATCAACGTGCCGATGACGAAGCTGAGCGGGCTGAAGAGGTACAAGATCTCCGAGCTCAAGTTCTTCGACCGCGCCGCGGGAGGGGGAGGCGCGTTCACGGGGCCCGAGGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCTTCTGAAGGAGCTCGAGACGCTCGTGTCCTGTGGCATGTTCGAGAGGGTCGACCTCGAGGGGAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTGTCTTTTGTCGAGAGCGTGTGGAGCGCTGCTAAGCAGTTCAAGTGCATCAATGTGGGGCTAATGTCGCAGTCGGGCCAGGTTGACTTCGACCAGGACATGACAGAGAGGGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGATTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGAGGTGCTAGGAATGATGAAGAAGCATGAGAAGGTGAGCGCTAAGCTCCTGCAGAGGATCACGGACCATGTCCAGAAATGGTACCACAATG]
[+] EMBL CB630938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAACGTGCCGCTGACGAAGCTGAGCGGGCTGAAGAGGTACAAGATCTCCGAGCTCAAGTTCTTCGACCGCGCCGCGGGAGGGGGAGGCGCGTTCACGGGACCCGAGGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCTTCTGAAGGAGCTCGAGACGCTCGTGTCCTGTGGCATGTTCGAGAGGGTCGACCTCGAGGGGAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTGTCCTTTGTCGAGAGCGTGTGGAGCGCTGCTAAGCAGTTCAAGTGCATCAATGTGGGGCTAATGTCGCAGTCGGGCCAGGTTGACTTCGACCAGGACATGACAGAGAGGGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGATTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGAGGTGCTAGGAATGATGAAGAAGCAGGAGAAGGTGAGCGCTAGGCTCCTGCAGAGGATCAGGGACCATGTCCAGAAATGGTACCACAATG]
[+] EMBL AU097643             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAGGCGCGTTCACGGGGCCCGAGGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCTTCTNAAGGAGCTCGANACGCTCGTNTCCTGTGGCATGTTCGANAGGGTCGACCTCGAGGGGAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTNTNTTTNTTCGANAGCTTGTGGAGCG                                                                                                                                                                                                                                                                           ]
[+] EMBL AU062732             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGATTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGAGGTGCTAGGAATGATGAAGAAGCAGGAGAAGGTGAGCGCTAGGCTCCNTCAGAGGATCAGGGACCATNTCCAGAAATGGTACCACAATG]


>consensus_10725#0 ACGAGAAAAGCCCCCCCATCCGCCTCCTCCTCCTCCCCCAAATTCCTCTGCTTCCCCCGG CGGCAAGACCGAAGCCTCGCCACCATCCGCGGCGGCCGCAATGGCGCTCACCTCCCAGAG CCTCTTCTTCTCCCCGCTGGCCGCCGGCCCATCCCGGAGAGTCCGGGGGCGGGGCCGCTC CACCTCCGTGTCAGCCGCCGCCTCCGCCTCGTCGCACAACTCGCAGCCCCACGGCCACCC CCAACAACCCCTCGCCGTCGCGTCGTCCAGCTCCAAATCCGAATCTAAGGGCTCGAAAAC CTTCGCCCTCGCCTCCGCCATCACTGCCGCCGCCTCTGGTGCATTCCTTCTCGCGTCATC TGGTGGCGGGTTCGGGGGCGGCGCCGGGGGTCCTCTCGGCGGTGGAGGCGGTGGATGGGG CGCCGGAGGAGGAGGAGGTGGTGGTGGTGGTGGCGGCGGCGGCGGGTTCTGGTCGCGGAT CTTCTCCGGCGGCGCGGCGCACGCGGATGAGAAGTCGTCGGGGGATTGGGACCCGCACGG GCTCCCGGCAAACATCAACGTGCCGATGACGAAGCTGAGCGGGCTGAAGAGGTACAAGAT CTCCGAGCTCAAGTTCTTCGACCGCGCCGCGGGAGGGGGAGGCGCGTTCACGGGGCCCGA GGATTCCTTCTTCGAGATGGTGACGCTGCAGCCCGGCGGCGTGTACACCAAGTCGCAGCT TCTGAAGGAGCTCGAGACGCTCGTGTCCTGTGGCATGTTCGAGAGGGTCGACCTCGAGGG GAAGGCCAAGCCCGATGGCACCCTTGGCCTCACCGTGTCTTTTGTCGAGAGCGTGTGGAG CGCTGCTAAGCAGTTCAAGTGCATCAATGTGGGGCTAATGTCGCAGTCGGGCCAGGTTGA CTTCGACCAGGACATGACAGAGAGGGAGAAGATGGATTACCTCCGGAAGCAGGAGCGTGA TTACCAGCAGCGTGTTCGTGGTGCCAAGCCGTGCATATTGCCAGATAACGTGCGTGGGGA GGTGCTAGGAATGATGAAGAAGCAGGAGAAGGTGAGCGCTAGGCTCCTGCAGAGGATCAG GGACCATGTCCAGAAATGGTACCACAATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)