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Oryza sativa
cluster # 10727 cluster # 10727       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10727#0 length = 1923 sequences # 5  
 consensus_10727#1 length = 1353 sequences # 1  
consensus_10727#2 length = 563 sequences # 2  
consensusID : consensus_10727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1923
fasta sequence 
                              [GCCGACGGAGAGACGGGAGGGCAACGGGAGGGCTTAGCGCGTCGCTCCCAACGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCAGAACGGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAGGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGCTGTTGAATCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTT-AAGGGAGCTGG-ACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAAT-GGATAAAGTGAAGAACAGGCACTACCAGCTAGCTTGCACGATGAC-TTTTGAGGCAGAACAT-GGTGTCTC-ATGTGATACT-GGAATCAATCAT-CCTAATCAG-TACTTC-AGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGTTTCTGTAATCGAAAACTTGTTCGACAAAACAATTGCGCTTCCAGATATGCAATTTCATTAATC]

[+] EMBL AK101812             [GCCGACGGAGAGACGGGAGGGCAACGGGAGGGCTTAGCGCGTCGCTCCCAACGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCAGAACGGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAGGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGCTGTTGAATCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTT AAGGGAGCTGG ACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAAT GGATAAAGTGAAGAACAGGCACTACCAGCTAGCTTGCACGATGAC TTTTGAGGCAGAACAT GGTGTCTC ATGTGATACT GGAATCAATCAT CCTAATCAG TATTTC AGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGTTTCTGTAATCGAAAACTTGTTCGACAAAACAATTGCGCTTCCAGATATGCAATTTCATTAATC]
[+] EMBL C72065               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTNAGGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGCTGTTGAATCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCNATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGACGGCCACCATTAAGGACCAAGAAAAGGATAGGTTGACTCCTATTGTCGANGCATTGAGTAATGCATATTTNGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGA TTCCCTGGAGGGTATTG CCACCTGGCT AAACTTCTTTCCCNC TTGGATGCGCCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA766847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGTCAAAGATAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGCTGTTGAACCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCACTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTACGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTT AAGGGAGCTGG ACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTTTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGNTGGTGATCACCATGGTTGNCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAAATGGGAATCAGNGGTCATNCATTAGAAGAGATAATGGGATAAAGNGAAAAANAGGCNCTACCAGCTAGCTTGCNCGATGACTTTTTGAGGCANAACATGGGGGCCTCAATGGGANACTGGGAATNAATCATNCCTAATCAGNNCCTTCAAGGGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU031070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTNAAGGGAGCTGGNACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGNTTTCTCAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB097019             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTAGAAGAGATAAT GGATAAAGTGAAGAACAGGCACTACCAGCTAGCTTGCACGATGAC TTTTGAGGCAGAACAT GGTGTCTC ATGTGATACT GGAATCAATCAT CCTAATCAG TACTTC AGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGTTTCT                                                           ]




>consensus_10727#0
GCCGACGGAGAGACGGGAGGGCAACGGGAGGGCTTAGCGCGTCGCTCCCAACGGTGATTC
GAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGA
GGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGC
GCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGT
ATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATT
GGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAA
GGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCAGAACGGAGGAGCTGCGGAA
GTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGA
ATCACAGAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGA
ATTTGAGGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGC
TGTTGAATCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCG
CCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGT
GGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGAC
GGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAA
TGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGA
TATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTT
GAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGG
AGCTGGACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGT
TGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGA
AGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGG
TGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGC
TCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAA
CAGGCACTACCAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGA
TACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAA
GAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAG
TCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATG
GAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACG
GTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAA
CATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAG
GAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACC
ATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGT
TTCTGTAATCGAAAACTTGTTCGACAAAACAATTGCGCTTCCAGATATGCAATTTCATTA
ATC

consensusID : consensus_10727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1353
fasta sequence 
                              [CGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATGGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGGAGCTGGACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAACAGGCACTACCAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGGTTTCGACACTACTAGTCTGTCAGCTGTTGCGATGCATTGTTTTCTAATATCTACTGGTTATTGGCAACAAATTTCTAATGTTCAATTGTGCGAACATAAACATCATTCTCACCCTTTGCTTTTTTATAGCTATTTTTCAGTATTCAACAATCAAATCCATGATATGTGTACAATTGGCAGCAATTCTAAGTTATTTTTC]

[+] EMBL AK064087             [CGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATGGAAAATGGACGGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGGAGCTGGACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAACAGGCACTACCAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGGTTTCGACACTACTAGTCTGTCAGCTGTTGCGATGCATTGTTTTCTAATATCTACTGGTTATTGGCAACAAATTTCTAATGTTCAATTGTGCGAACATAAACATCATTCTCACCCTTTGCTTTTTTATAGCTATTTTTCAGTATTCAACAATCAAATCCATGATATGTGTACAATTGGCAGCAATTCTAAGTTATTTTTC]




>consensus_10727#1
CGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGAT
CGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTA
CCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCG
CCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAAT
GGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGAC
TTTGAACAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGTGGTTACCCAA
TTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATGGAAAATGGACGGCCACCATT
AAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAATGCATATTTT
GGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGATATTGACCAA
CTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTTGAGAGAAAAC
CATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGGAGCTGGACTA
AAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGTTGGCTCTGAG
CGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGAAGGAAAACGA
ACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGAT
CACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGCTCTCAATAAA
ATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAACAGGCACTAC
CAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATC
AATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCA
GTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAA
TGCGGAATTTCAGGTTTCGACACTACTAGTCTGTCAGCTGTTGCGATGCATTGTTTTCTA
ATATCTACTGGTTATTGGCAACAAATTTCTAATGTTCAATTGTGCGAACATAAACATCAT
TCTCACCCTTTGCTTTTTTATAGCTATTTTTCAGTATTCAACAATCAAATCCATGATATG
TGTACAATTGGCAGCAATTCTAAGTTATTTTTC

consensusID : consensus_10727#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence 
                              [TCTGAGTTATGAAATACACAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGTTTCTGTAATCGAAAA]

[+] EMBL CB096344             [TCTGAGTTATGAAATACACAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAATGTTTCTGTAATCGAAAA]
[+] EMBL AU075449             [                                                                                                                                                                                                                                                                                                                      TTCAGAATTCCAACGNCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTANACATGACTTGAGCACAGAAAGTAGATAGAACCNTACAAGTACGTACTTGTCAAAACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAaaaa                               ]




>consensus_10727#2
TCTGAGTTATGAAATACACAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTC
TCATGTGATACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTG
AAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
AAAGTCAGTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTA
ATGATATGGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGC
TTTGCACGGTTTCAGAATTCCAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTC
CCTGTAAACATGACTTGAGCACAGAAAGTAGATAGAACCGTACAAGTACGTACTTGTCAA
AACCAAAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACT
ATGTAACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGC
TGTAATGTTTCTGTAATCGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10727#0      GCCGACGGAGAGACGGGAGGGCAACGGGAGGGCTTAGCGCGTCGCTCCCAACGGTGATTC 60
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      GAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCCACCGGCAGATCGCGGCGGA 120
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      GGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCCTGCCAACCTACCGGGTGGC 180
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      GCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCGCCATCGACCGCCTCCGAGT 240
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      ATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGACCGGAGGAAATGGAGAAATT 300
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      GGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAA 360
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      GGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCAGAACGGAGGAGCTGCGGAA 420
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ----------CGGTGATTCGAGCCAAGACCTAGCCGCCGCCATGGAGATCGTGAGATCCC 50
                                                                                   

consensus_10727#0      GTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGA 480
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      ACCGGCAGATCGCGGCGGAGGCGGCGGCCGGCGTAGGATGTGGCGGCGGGGCGGGAGGCC 110
                                                                                   

consensus_10727#0      ATCACAGAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGA 540
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      TGCCAACCTACCGGGTGGCGCCGCAGCTGGAGGTGCGGTTGGAAGAGTTTGAGCTCTTCG 170
                                                                                   

consensus_10727#0      ATTTGAGGCTGTCAAAGACAAGTTGAGCCAAGTTGCACGCACCATTGGTCAATCTGCAGC 600
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      CCATCGACCGCCTCCGAGTATTGAAGGGGATCGCCGACGGGCTCTCGCGAGGGAAGAGAC 230
                                                                                   

consensus_10727#0      TGTTGAATCTGTGTTCTTCAAGGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCG 660
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      CGGAGGAAATGGAGAAATTGGTCAAGGAATTGTGGAAAGCCCATATGAGGCACCAGGATC 290
                                                                                   

consensus_10727#0      CCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGT 720
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      CTACAGAGACTTTGAACAAGGATATGCTTATGTTGCGATGAGTCAGGTTGTTTCGCTTGT 350
                                                                                   

consensus_10727#0      GGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATAGAAAATGGAC 780
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      GGTTACCCAATTCCGCTGCAATATCTCGAAGGCACTTGTTTTAACAAATGGAAAATGGAC 410
                                                                                   

consensus_10727#0      GGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAA 840
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      GGCCACCATTAAGGAACAAGAAAAGGATAGGTTGACTCCTATTGTCGAAGCATTGAGTAA 470
                                                                                   

consensus_10727#0      TGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGA 900
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      TGCATATTTTGGACCTGATTACTCTCAGCCAAAGGATGCTGTTGAGATTTCTCTGAAGGA 530
                                                                                   

consensus_10727#0      TATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTT 960
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      TATTGACCAACTGGCTAAAACTTCTTTCCCTCTTTGTATGCGCCACATGCTAGAGAAGTT 590
                                                                                   

consensus_10727#0      GAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGG 1020
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      GAGAGAAAACCATCATCTGAAGCATGGGGGCAGAATGCAGTTTGGTCTTTTCCTTAAGGG 650
                                                                                   

consensus_10727#0      AGCTGGACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGT 1080
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      AGCTGGACTAAAGTTGGAAGATGCTCTAGCATTTTGGAGGGCAGAGTTTTCTCAGAAGGT 710
                                                                                   

consensus_10727#0      TGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGA 1140
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      TGGCTCTGAGCGATTTGACAAGGAATATGCCTACAGTATCAGGCATAATTATGGAAAGGA 770
                                                                                   

consensus_10727#0      AGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGG 1200
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      AGGAAAACGAACAGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGG 830
                                                                                   

consensus_10727#0      TGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGC 1260
consensus_10727#2      ------------------------------------------------------------
consensus_10727#1      TGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGGTGAAGACAACTTGAGAGCAGC 890
                                                                                   

consensus_10727#0      TCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAA 1320
consensus_10727#2      -----------------------------------------------------TCTGAGT 7
consensus_10727#1      TCTCAATAAAATGGGAATCAGTGGTCATCCATTAGAAGAGATAATGGATAAAGTGAAGAA 950
                                                                            *      

consensus_10727#0      CAGGCACTAC-CAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTG 1379
consensus_10727#2      TATGAAATACACAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTG 67
consensus_10727#1      CAGGCACTAC-CAGCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTG 1009
                        * * * *** *************************************************

consensus_10727#0      ATACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAA 1439
consensus_10727#2      ATACTGGAATCAATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAA 127
consensus_10727#1      ATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAA 1069
                       **************************** *******************************

consensus_10727#0      AGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCA 1499
consensus_10727#2      AGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCA 187
consensus_10727#1      AGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCA 1129
                       ************************************************************

consensus_10727#0      GTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATAT 1559
consensus_10727#2      GTCCATCCAAATGCGGAATTTCAGTTCGTATCAAGATTTCATCCTTGCTGCTAATGATAT 247
consensus_10727#1      GTCCATCCAAATGCGGAATTTCAGGTTTCGACACTACT--AGTCTGTCAGCTGTTGCGAT 1187
                       ************************ *     **  * *  *  **  * ***  **  **

consensus_10727#0      GGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCAC 1619
consensus_10727#2      GGAGAACAACAATTACTAATCTTTATTCTGATGCCTAGATGGAATTCTATTGCTTTGCAC 307
consensus_10727#1      G-----CATTGTTTTCTAATATCTA--CTGGTTATTGGCAACAAATTTCTAATGTTCAAT 1240
                       *     **    ** ***** * **  *** *   * *    ** * * *    **  * 

consensus_10727#0      GGTTTCAGAATTC-CAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTA 1678
consensus_10727#2      GGTTTCAGAATTC-CAACGGCTGAATATGTCATCCCCCAAAAGTGATGGATGTCCCTGTA 366
consensus_10727#1      TGTGCGAACATAAACATCATTCTCACCCTTTGCTTTTTTATAGCT----ATTTTTCAGTA 1296
                        **   *  **   ** *      *    *         * **      ** *  * ***

consensus_10727#0      AACATGACTTGAGCACAGAAAGTAGATAGAACCG-TACAAGTACGTACTTGTCAAAACCA 1737
consensus_10727#2      AACATGACTTGAGCACAGAAAGTAGATAGAACCG-TACAAGTACGTACTTGTCAAAACCA 425
consensus_10727#1      TTCAACAATCAAATCCATGATATGTGTACAATTGGCAGCAATTCTAAGTTATTTTTC--- 1353
                         **  * *  *   **  *  *   ** **  *  *  * * *  * ** *        

consensus_10727#0      AAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTA 1797
consensus_10727#2      AAGGAAACCATGATTATGGATATCAAATTATTGTTTGTGTTGGTAAGTGGTAACTATGTA 485
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      ACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAA 1857
consensus_10727#2      ACCATGGTAACTATGACCAGGGGGAGTTGTGAACACCTCATCAGTTAAGTTGCGCTGTAA 545
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      TGTTTCTGTAATCGAAAACTTGTTCGACAAAACAATTGCGCTTCCAGATATGCAATTTCA 1917
consensus_10727#2      TGTTTCTGTAATCGAAAA------------------------------------------ 563
consensus_10727#1      ------------------------------------------------------------
                                                                                   

consensus_10727#0      TTAATC 1923
consensus_10727#2      ------
consensus_10727#1      ------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)