cluster # 10728

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Oryza sativa
cluster # 10728 cluster # 10728 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10728#0 length = 608 sequences # 7

consensus_10728#1 length = 562 sequences # 1

consensusID : consensus_10728#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 608
fasta sequence

                              [GCCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG-CCGGGACCCT-CGTTTTCGT-ATG-CCTGTGGGTG-CCGG-AGACTAAAGGAAGAACACTT-GAGGAAATTGCATTTTCTTTCCGGTG-AAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTT-GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT-AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTTTGAGC-AAATATATAGCTG-AGGGTTGTTAGTTCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU083580             [GCCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG CCGGGACCCT CGTTTTCGT ATG CCTGTGGGTG CCGG AGACTAAAGGAAGAACACTT GAGGAAATTGCATTTTCTTTCCGGTG AAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTT GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGGCATGCCGTATGAAGAATTTTGAGCAAAATATATAGCTGAAGGGTTGTTtaa                         ]
[-] EMBL CB637227             [ CCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG CCGGGACCCT CGTTTTCGT ATG CCTGTGGGTG CCGG AGACTAAAGGAAGAACACTT GAGGAAATTGCATTTTCTTTCCGGTG AAGCTCAGGCCAACGTTGTCTGGCGATCAGCTTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTT GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCTATATGTCATGCCGTATGATGAATTTTGAGC AAATATATAGCTG AGGGTTGTTAGTTac                      ]
[-] EMBL CB671039             [ CCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG CCGGGACCCT CGTTTTCGT ATG CCTGTGGGTG CCGG AGACTAAAGGAAGAACACTT GAGGAAATTGCATTTTCTTTCCGGTG AAGCTCAGGCCAACGTTGTTTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATTTAAGGCAAGCGTGTATTGGTT GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTT                                                         ]
[-] EMBL CB675065             [ CCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG CCGGGACCCT CGTTTTCGT ATG CCTGTGGGTG CCGG AGACTAAAGGAAGAACACTT GAGGAAATTGCATTTTCTTTCCGGTG AAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTT GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATG                                                                             ]
[+] EMBL C98762               [                                                          GAAGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTG CCGGGACCCT CGTTTTCGT ATG CCTGTGGGTG CCGG AGACTAAAGGAAGAACACTT GAGGAAATTGCATTTTCTTTCCGGTG AAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTTGGCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGTAAGCAAGAGACAATATAATGGACCA TGCAAGTTGTCACGCACGCCA                                                                                                               ]
[+] EMBL C98763               [                                                                                                                                                          TCTATGCTGCTGTGTGTGCCCGGGACCCTCCGTTTTCGTAATGCCCTGTGGNTGCCCGGNAGACTAAAGGNAGAACACTTGGAGGAAATTNCATTTTCTTTCCGGTGAAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTT GCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGT AGCAAGAGACAATATAATGGACCATTGCAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTTTGAGC AAATATATAGCTG AGGGTTGTTAGTTCTAAAAA                 ]
[+] EMBL AU197987             [                                                                                                                                                                                                                                                     CATTTTNTTTCCGGTG AAGCTCAGGCCAACGTTGTTTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACANATTTGGNTCCGTGAGCTATCGGATTAGGCATCAANATTTGAATTNTTGAGTTCATGTGTATTTAAGGCAAGCGTGTATTGGNT GCATTTGTAATTTTGTATCATGNGTTCATGTATGNGCAATAGAAATATAGAATGGAGCAGT AGCAANAGACAATATAATGGNCCNTTGCAAGTTGTCACGCNCNCCATGTGGATGGATGGAACAATGAANATGCCAATATGTCATGCCGTATGATGAATTTTGAGC AAATATATAGCTG AGGGTTGTTAGTTCCAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10728#0
GCCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGA
AGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTG
ATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACC
CTCGTTTTCGTATGCCTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCA
TTTTCTTTCCGGTGAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGT
CGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGT
TCATGTGTATCTAAGGCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCA
TGTATGTGCAATAGAAATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTG
CAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCC
GTATGATGAATTTTGAGCAAATATATAGCTGAGGGTTGTTAGTTCCAAAAAAAAAAAAAA
AAAAAAAA

consensusID : consensus_10728#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [NTAATGTCTGAGATTCTNCCTGTAAATATCNAGAGCCTTGCTGGAAGCNTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGAAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACCCTCGTTTTCGTATGCCTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCATTTTCTTTCCGGTGAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTGCAAGTTGTCNCGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTTTGAGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU083353             [NTAATGTCTGAGATTCTNCCTGTAAATATCNAGAGCCTTGCTGGAAGCNTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGAAAGCTTGATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACCCTCGTTTTCGTATGCCTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCATTTTCTTTCCGGTGAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAGGCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGAAATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTGCAAGTTGTCNCGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTTTGAGCAAAAAAAAAAAAAAAAAAA]




>consensus_10728#1
NTAATGTCTGAGATTCTNCCTGTAAATATCNAGAGCCTTGCTGGAAGCNTTGCAACCCTT
GCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGAAAGCTTGATGTTAAGCTGGAGC
AATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACCCTCGTTTTCGTATGC
CTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCATTTTCTTTCCGGTGA
AGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGTCGGCAACAGATTTGG
CTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGTTCATGTGTATCTAAG
GCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCATGTATGTGCAATAGA
AATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTGCAAGTTGTCNCGCAC
GCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCCGTATGATGAATTTTG
AGCAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10728#0      GCCATACCATGGATCATAATGTCTGAGATTCTTCCTGTAAATATCAAGAGCCTTGCTGGA 60
consensus_10728#1      ---------------NTAATGTCTGAGATTCTNCCTGTAAATATCNAGAGCCTTGCTGGA 45
                                       **************** ************ **************

consensus_10728#0      AGCGTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGCAAGCTTG 120
consensus_10728#1      AGCNTTGCAACCCTTGCAAACTGGTTGACGGCTTGGCTCATTACGATGACAGAAAGCTTG 105
                       *** ************************************************ *******

consensus_10728#0      ATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACC 180
consensus_10728#1      ATGTTAAGCTGGAGCAATGGAGGAACATTTGCTATCTATGCTGCTGTGTGTGCCGGGACC 165
                       ************************************************************

consensus_10728#0      CTCGTTTTCGTATGCCTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCA 240
consensus_10728#1      CTCGTTTTCGTATGCCTGTGGGTGCCGGAGACTAAAGGAAGAACACTTGAGGAAATTGCA 225
                       ************************************************************

consensus_10728#0      TTTTCTTTCCGGTGAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGT 300
consensus_10728#1      TTTTCTTTCCGGTGAAGCTCAGGCCAACGTTGTCTGGCGATCAGCCTGGTGCACGTCAGT 285
                       ************************************************************

consensus_10728#0      CGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGT 360
consensus_10728#1      CGGCAACAGATTTGGCTCCGTGAGCTATCGGATTAGGCATCAAGATTTGAATTCTTGAGT 345
                       ************************************************************

consensus_10728#0      TCATGTGTATCTAAGGCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCA 420
consensus_10728#1      TCATGTGTATCTAAGGCAAGCGTGTATTGGTTGCATTTGTAATTTTGTATCATGTGTTCA 405
                       ************************************************************

consensus_10728#0      TGTATGTGCAATAGAAATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTG 480
consensus_10728#1      TGTATGTGCAATAGAAATATAGAATGGAGCAGTAGCAAGAGACAATATAATGGACCATTG 465
                       ************************************************************

consensus_10728#0      CAAGTTGTCACGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCC 540
consensus_10728#1      CAAGTTGTCNCGCACGCCATGTGGATGGATGGAACAATGAAGATGCCAATATGTCATGCC 525
                       ********* **************************************************

consensus_10728#0      GTATGATGAATTTTGAGCAAATATATAGCTGAGGGTTGTTAGTTCCAAAAAAAAAAAAAA 600
consensus_10728#1      GTATGATGAATTTTGAGCAAAAAAAAAAAAAAAAAAA----------------------- 562
                       ********************* * * *    *                            

consensus_10728#0      AAAAAAAA 608
consensus_10728#1      --------