cluster # 10730

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Oryza sativa
cluster # 10730 cluster # 10730 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10730#0 length = 572 sequences # 7

consensus_10730#1 length = 258 sequences # 1

consensusID : consensus_10730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 572
fasta sequence

                              [CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA-GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG-GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA-GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG-CTCAT-GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120228             [CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGT                              ]
[+] EMBL CF326090             [            TCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTG                             ]
[+] EMBL C74724               [                   CTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA CTAGGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG NGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGNATGCCTCAT GGACCGCTTCGNCCTTACCTGACGCCG TCAATGGn                                                                                                                                                                                                         ]
[+] EMBL OSC2581              [                    TACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAG TANGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGNGGCACCGGCGGCCGACGCCGTGGTTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGTACGAGGGACAGCAGCATNCTNCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCATGGGACCGn                                                                                                                                                                                                                                      ]
[+] EMBL AU058301             [                    TACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA CTANTTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGNGGCACCGGCGGCCGACGCCG TGGTCGGCCAGCGAGCTCAGAGCGAAGGGGNGANCTNCAAGAGTAATGGTTGGTGATGGTGTTGTGCAGGAGATCACGACGANGACGANGGACAGCAGCATCCNCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT                                                                                                                                                                                                                                              ]
[+] EMBL AU101357             [                     ACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGNAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA]
[+] EMBL CB680140             [                                                                                                                                                                                                                                                                    TGTGCACGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGC                            ]




>consensus_10730#0
CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA
GCTAGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCA
ATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCA
CCGGCGGCCGACGCCGGGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGT
AAGGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTC
CTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTGACGC
CGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTA
TATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTAT
CATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTA
GTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA

consensusID : consensus_10730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGCCGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTAGTGNTGGNTAAAANAAA]

[+] EMBL AU183192             [CCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGCCGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTAGTGNTGGNTAAAANAAA]




>consensus_10730#1
CCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANG
CCGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGT
ATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTA
TCATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCT
AGTGNTGGNTAAAANAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10730#0      CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA 60
consensus_10730#1      ------------------------------------------------------------
                                                                                   

consensus_10730#0      GCTAGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCA 120
consensus_10730#1      ------------------------------------------------------------
                                                                                   

consensus_10730#0      ATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCA 180
consensus_10730#1      ------------------------------------------------------------
                                                                                   

consensus_10730#0      CCGGCGGCCGACGCCGGGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGT 240
consensus_10730#1      ------------------------------------------------------------
                                                                                   

consensus_10730#0      AAGGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTC 300
consensus_10730#1      -----------------------------------------------------------C 1
                                                                                  *

consensus_10730#0      CTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTGACGC 360
consensus_10730#1      CTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGC 61
                       ******************************************************* * **

consensus_10730#0      CGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTA 420
consensus_10730#1      CGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTA 121
                       ***** *** ************ ******************** ****************

consensus_10730#0      TATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTAT 480
consensus_10730#1      TATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTAT 181
                       ************************************************************

consensus_10730#0      CATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTA 540
consensus_10730#1      CATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTA 241
                       ************  ****** *********** *** ******************* ***

consensus_10730#0      GTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA 572
consensus_10730#1      GTGNTGGNTAAAANAAA--------------- 258
                       *** *** *   * ***