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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1229 fasta sequence
[GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACCATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAGATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGGATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA-CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCGGCGGAGGAAGCAGTCGCCGCCGCCGTCGTCGACGAGGAGATGCAGGAGGCCGAGACGGACAAGAAG]
[+] EMBL AK119748 [GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACCATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAGATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGGATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGTAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCGGCG ]
[+] EMBL CB650320 [ GCTTACCTTACAAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCCCCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCCTCGAAGATCACCTCACTCCCGACCTC ]
[+] EMBL CB628953 [ CTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGC ]
[+] EMBL CB628993 [ CTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCC ]
[+] EMBL CB619376 [ AGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCTAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCG ]
[+] EMBL AU070205 [ CGCGCAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGNGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCGGCGGAGGAAGCAGTCGCCGCCGCCGTCGTCGACGAGGAGATGCAGGAGGCCGAGACGGACAAGAAG]
[+] EMBL AU070201 [ CGCGCAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCG ]
consensusID : consensus_10748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence
[CGCTGCACTGGATCCTCAGAAACGGCTGGCTTAGAAGGGCAGGTGGTCCGTTGGCAACTTGGCATTGCGGTTGCCTAGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTCCAAAACAAAAGAAGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTTGGAATAAGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAAGATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGCCCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGATGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAACAGGGAGTGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA]
[+] EMBL BE040051 [CGCTGCACTGGATCCTCAGAAACGGCTGGCTTAGAAGGGCAGGTGGTCCGTTGGCAACTTGGCATTGCGGTTGCCTAGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTCCAAAACAAAAGAAGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTTGGAATAAGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAAGATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGCCCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGATGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAACAGGGAGTGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10748#0 GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACC 60
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 ATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAG 120
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 ATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGG 180
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 ATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCG 240
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 GTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGG 300
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 CGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCG 360
consensus_10748#1 ------------------------------------------------------------
consensus_10748#0 GCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCG 420
consensus_10748#1 ------------------------------------------CGCTGCACTGGATCCTCA 18
* **** ** *
consensus_10748#0 CCGGCGGC-GGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCG 479
consensus_10748#1 GAAACGGCTGGCTTAGAAGGGCAGGTGGT--CCGTTGGCAACTTGGCATTGCGGTTGCCT 76
**** *** ** * ** ** ** * * * * ** * *
consensus_10748#0 GAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAG 539
consensus_10748#1 AGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTC-CAAAACAAAAGA 135
******** * *** * ** *** * * *** * * * *
consensus_10748#0 GGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTA 599
consensus_10748#1 AGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTT--GGAATAAGTA 193
* * * **** * * * * * *** * * ** ***
consensus_10748#0 TATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATAC 659
consensus_10748#1 TATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATAC 253
************************************************************
consensus_10748#0 CTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCAC 719
consensus_10748#1 CTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCAC 313
************************************************************
consensus_10748#0 GACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAG 779
consensus_10748#1 GACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAG 373
************************************************************
consensus_10748#0 GTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATC 839
consensus_10748#1 GTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATC 433
************************************************************
consensus_10748#0 AGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTC 899
consensus_10748#1 AGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTC 493
************************************************************
consensus_10748#0 ACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTC 959
consensus_10748#1 ACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTC 553
************************************************************
consensus_10748#0 TACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGG-GAA 1018
consensus_10748#1 TACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAA 613
******************************************************* ***
consensus_10748#0 GATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGC 1078
consensus_10748#1 GATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGC 673
********************* ** ********** ****************** ***
consensus_10748#0 C-GACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGA 1137
consensus_10748#1 CCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGA 733
* *** ********** ******************************* ***********
consensus_10748#0 TGACGACAGAAGAGAAATGCGCNGCGGC-GGAGGAAGCAGTCGCCGCCGCCGTCGTCGAC 1196
consensus_10748#1 TGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAAC 793
**** ************ *** ** ** ******** * * ** ** *** * * **
consensus_10748#0 GAGGAGATGCAGGAGGCCGAGACGGACAAGAAG--------------------------- 1229
consensus_10748#1 AGGGAG-TGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA 852
**** **** **** * * * *** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||