These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATGGTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANAGAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATTAGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGGACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACTATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATAGACCNCTATCCCNCTATCTAAACCTTCNGGGANATGCATGCCAAAACACCTTCACTCTCATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATTNATGCNAATCTTGAA] [+] EMBL AA752092 [TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATGGTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANAGAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATTAGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGGACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACTATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATAGACCNCTATCCCNCTATCTAAACCTTCNGGGANATGCATGCCAAAACACCTTCACTCTCATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATTNATGCNAATCTTGAA] consensusID : consensus_1077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [ATGCTGGGCTTCCGGACTAGTTTTTTAGCACCATGGTGTCACAAAAGGTGATTCAGGGAGAGGCGACCGTGAGACTGCAAATATACAAATCTGGGAGGCGGCGACCGTGATACCCGCAAGAGGTGATTCACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC] [+] EMBL AI978333 [ATGCTGGGCTTCCGGACTAGTTTTTTAGCACCATGGTGTCACAAAAGGTGATTCAGGGAGAGGCGACCGTGAGACTGCAAATATACAAATCTGGGAGGCGGCGACCGTGATACCCGCAAGAGGTGATTCACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1077#0 TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAAT 60 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 GTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATG 120 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 GTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANA 180 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 GAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATT 240 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 AGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGG 300 consensus_1077#1 ---------------------------------------------ATGCTGGGCTTCCGG 15 * * * * ** consensus_1077#0 ACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACT 360 consensus_1077#1 ACTAGTTTTTTAGCACCATGGTGTCA-CAAAAGGTG-ATTCAGGGAGAGGCGACCGTGAG 73 ** * ** * * ** * **** * * * ** * * * consensus_1077#0 ATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATA 420 consensus_1077#1 ACT-GCAAATAT-ACAAATCTGGG---AGGCGGCGACCGTGATACCCGCAAGAGGTGATT 128 * * * * **** ***** ** * ** * ** * * ** consensus_1077#0 GACCNCTATCCCNCTATCTAAACCT-TCNGGGANATGCATGCCAAAACACCTTCACTCTC 479 consensus_1077#1 CACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACA 188 *** *** ** * * * * * * *** ** * ** * * * consensus_1077#0 ATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATT 539 consensus_1077#1 AGCC---GACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC-------------- 231 * * ******* ** ** * ** * * consensus_1077#0 NATGCNAATCTTGAA 554 consensus_1077#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||