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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1397 fasta sequence
[CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT-GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT-ATTCGCCATGTT-AAAGGA-TTTTGTGAA-TGAAGTCAAGTCGGAGGATCTAGTC-TCTCCT-ACTCTGATAATT-ATTGGG-AAGGTGGTGGCATTGTCACCCTTTT-GGATCGATTCAT-CCAAACAGGGTGCACAATCCATT-GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT-CTGATCTGG-TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG-CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC-GTGTACACCCTTTTC--AAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK072497 [CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT ATTCGCCATGTT AAAGGA TTTTGTGAA TGAAGTCAAGTCGGAGGATCTAGTC TCTCCT ACTCTGATAATT ATTGGG AAGGTGGTGGCATTGTCACCCTTTT GGATCGATTCAT CCAAACAGGGTGCACAATCCATT GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCC ]
[+] EMBL OSC5441 [ CCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACANCGGCTGTTGCAGTTGAGCGTGGCACTANCCCCCAACAACGCATGGTAATTCGCCATGTTAAAAGGATTTTTGTGAATTAAAGTCAAGTCGGAGGATCTAGTCTTCTCCT ACTCTGATAATTAATTGGG ]
[+] EMBL C96838 [ TCTCCTAACTCTGATAATT ATTGGGAAAGGTGGTGGCATTTTCCCCCTTTTGGGATCGATTCATCCCAAACAGGNTGCACAACCCATTGGNGAATTTGTACGCAGCCGGGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCCTGATCTGGTTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGNCAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCCTTTTC AAAAA ]
[-] EMBL CA763375 [ AGGTGGGGGCATTGTCACCCTTTT GGTTCGATTATT CCAAACAGGGTGCCCAATCCATT GAGAATTTGTCCGCAGCCGAGCCCAAAAGATAACAGTTCCTCTAGAATCAAATGTGGGAGTGCCCGTTGAGTAATGTCATACATAAGATATGGACTTTCCCAAGTAAGATTTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCCCAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTTTTCAACTCGGAGTAATACTCCTTTACTGGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTGGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTTTGAATAAAAC GTGTACCCCCTTTTCCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF196080 [ ATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACC ]
[+] EMBL AU181436 [ AGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAACTGTGTACACCCTTTTC CTAAAAA ]
consensusID : consensus_10784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence
[CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC-GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA]
[+] EMBL CB640687 [CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCC ]
[+] EMBL AU181435 [ CCATCAGCTCACCACAACTATCCCGGCATCGCCATGGCAGCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGAGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10784#0 -----------------------------------------------CCTGGTCCTGGGG 13
consensus_10784#1 CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGG 60
*************
consensus_10784#0 CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 73
consensus_10784#1 CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 120
************************************************************
consensus_10784#0 GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 133
consensus_10784#1 GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 180
************************************************************
consensus_10784#0 CCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGC 193
consensus_10784#1 CCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGCG-C 239
************************* **************** *** * * * * ** *
consensus_10784#0 AAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTC 253
consensus_10784#1 TCGCCCTTCGACCACCGCGCTTCCAGCC---------TCTCCCCGCCCCCATT----CCC 286
* * ** *** * ** ** * ** * * * *
consensus_10784#0 GCAGAGGCTGGTGCCAATGTGGTGCG-GTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAG 312
consensus_10784#1 GCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATC 346
** * * *** * * * * * *** **** * ** *
consensus_10784#0 GGGTGGAGAAGAGATGGATT-TCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAG 371
consensus_10784#1 ATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGC 406
** * ** * ****** * * ** * * ** **
consensus_10784#0 GAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTG 431
consensus_10784#1 GA----CGCCTGGTCCTACG-CCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTG 461
** * * * * * ** * ** * * * * **
consensus_10784#0 TTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTAT 491
consensus_10784#1 CGGCTGC-GGCGGCGGCTTCTT--CGGGTCGCC---GGGACGACGAGATCG---CGCTGC 512
*** * * * * * ** ** * ** * * * * * * * * * **
consensus_10784#0 ATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGTTTGTCAA 551
consensus_10784#1 AGCTGCCGGAGC-TGAGGAGGCTGCTGGAGGCGCTGCGGGCGT-CAGAGGGA-------- 562
* ** * *** ** * * * *** ** * ** * * **
consensus_10784#0 CACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTG 611
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGTATTCGCCATGTTAAAGGATT 671
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGAAGG 731
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TGGTGGCATTGTCACCCTTTTGGATCGATTCATCCAAACAGGGTGCACAATCCATTGAGA 791
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 ATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGAC 851
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 CGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCTGA 911
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TCTGGTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGCAGGAGATTATGC 971
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 ACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAAC 1031
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 AAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACT 1091
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCG 1151
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 CTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTT 1211
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTG 1271
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTG 1331
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 TACATTTGATAATTATTTCTGAATAAAACGTGTACACCCTTTTCAAAAAAAAAAAAAAAA 1391
consensus_10784#1 ------------------------------------------------------------
consensus_10784#0 AAAAAA 1397
consensus_10784#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||