These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1397 fasta sequence [CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT-GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT-ATTCGCCATGTT-AAAGGA-TTTTGTGAA-TGAAGTCAAGTCGGAGGATCTAGTC-TCTCCT-ACTCTGATAATT-ATTGGG-AAGGTGGTGGCATTGTCACCCTTTT-GGATCGATTCAT-CCAAACAGGGTGCACAATCCATT-GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT-CTGATCTGG-TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG-CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC-GTGTACACCCTTTTC--AAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK072497 [CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT ATTCGCCATGTT AAAGGA TTTTGTGAA TGAAGTCAAGTCGGAGGATCTAGTC TCTCCT ACTCTGATAATT ATTGGG AAGGTGGTGGCATTGTCACCCTTTT GGATCGATTCAT CCAAACAGGGTGCACAATCCATT GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCC ] [+] EMBL OSC5441 [ CCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACANCGGCTGTTGCAGTTGAGCGTGGCACTANCCCCCAACAACGCATGGTAATTCGCCATGTTAAAAGGATTTTTGTGAATTAAAGTCAAGTCGGAGGATCTAGTCTTCTCCT ACTCTGATAATTAATTGGG ] [+] EMBL C96838 [ TCTCCTAACTCTGATAATT ATTGGGAAAGGTGGTGGCATTTTCCCCCTTTTGGGATCGATTCATCCCAAACAGGNTGCACAACCCATTGGNGAATTTGTACGCAGCCGGGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCCTGATCTGGTTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGNCAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCCTTTTC AAAAA ] [-] EMBL CA763375 [ AGGTGGGGGCATTGTCACCCTTTT GGTTCGATTATT CCAAACAGGGTGCCCAATCCATT GAGAATTTGTCCGCAGCCGAGCCCAAAAGATAACAGTTCCTCTAGAATCAAATGTGGGAGTGCCCGTTGAGTAATGTCATACATAAGATATGGACTTTCCCAAGTAAGATTTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCCCAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTTTTCAACTCGGAGTAATACTCCTTTACTGGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTGGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTTTGAATAAAAC GTGTACCCCCTTTTCCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF196080 [ ATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACC ] [+] EMBL AU181436 [ AGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAACTGTGTACACCCTTTTC CTAAAAA ] consensusID : consensus_10784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence [CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC-GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA] [+] EMBL CB640687 [CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCC ] [+] EMBL AU181435 [ CCATCAGCTCACCACAACTATCCCGGCATCGCCATGGCAGCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGAGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10784#0 -----------------------------------------------CCTGGTCCTGGGG 13 consensus_10784#1 CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGG 60 ************* consensus_10784#0 CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 73 consensus_10784#1 CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 120 ************************************************************ consensus_10784#0 GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 133 consensus_10784#1 GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 180 ************************************************************ consensus_10784#0 CCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGC 193 consensus_10784#1 CCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGCG-C 239 ************************* **************** *** * * * * ** * consensus_10784#0 AAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTC 253 consensus_10784#1 TCGCCCTTCGACCACCGCGCTTCCAGCC---------TCTCCCCGCCCCCATT----CCC 286 * * ** *** * ** ** * ** * * * * consensus_10784#0 GCAGAGGCTGGTGCCAATGTGGTGCG-GTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAG 312 consensus_10784#1 GCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATC 346 ** * * *** * * * * * *** **** * ** * consensus_10784#0 GGGTGGAGAAGAGATGGATT-TCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAG 371 consensus_10784#1 ATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGC 406 ** * ** * ****** * * ** * * ** ** consensus_10784#0 GAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTG 431 consensus_10784#1 GA----CGCCTGGTCCTACG-CCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTG 461 ** * * * * * ** * ** * * * * ** consensus_10784#0 TTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTAT 491 consensus_10784#1 CGGCTGC-GGCGGCGGCTTCTT--CGGGTCGCC---GGGACGACGAGATCG---CGCTGC 512 *** * * * * * ** ** * ** * * * * * * * * * ** consensus_10784#0 ATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGTTTGTCAA 551 consensus_10784#1 AGCTGCCGGAGC-TGAGGAGGCTGCTGGAGGCGCTGCGGGCGT-CAGAGGGA-------- 562 * ** * *** ** * * * *** ** * ** * * ** consensus_10784#0 CACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTG 611 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGTATTCGCCATGTTAAAGGATT 671 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGAAGG 731 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TGGTGGCATTGTCACCCTTTTGGATCGATTCATCCAAACAGGGTGCACAATCCATTGAGA 791 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 ATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGAC 851 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 CGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCTGA 911 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TCTGGTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGCAGGAGATTATGC 971 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 ACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAAC 1031 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 AAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACT 1091 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCG 1151 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 CTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTT 1211 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTG 1271 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTG 1331 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 TACATTTGATAATTATTTCTGAATAAAACGTGTACACCCTTTTCAAAAAAAAAAAAAAAA 1391 consensus_10784#1 ------------------------------------------------------------ consensus_10784#0 AAAAAA 1397 consensus_10784#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||