These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 650 fasta sequence [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTTGGATTCTCAAAAAAAAAANAANNAAAANANAAAAANNAAAAAAAANCCT] [+] EMBL AK063694 [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCT ] [+] EMBL AU102210 [ GCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGC ] [+] EMBL AU078362 [ GCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGC ] [+] EMBL CB656387 [ AAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATC TTTGGATTCTCAAAAAAAAA ] [+] EMBL CA755031 [ GCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTNATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACNATTACTACACGGCATGAGGAACANATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTTGGATTCTCAGTTTNNNNANAANNAAAANANAAAAANNAAAAAAAANCCT] [+] EMBL AU182572 [ GCCTGNGTTTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTANCTNCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTNGCGGCGGCGGCTTTGCTNTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTNTTCAAAAAAAATGANAGAATAATTACTGCTCCTACTCTGCTTGNACCTAGTACTACAATTACTACCCGGCATGAGGAACAAATTACTAACTGTAATNAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATC TTTGGATTCTCNAAAAAAAAAAAAAAAAAAa ] consensusID : consensus_10790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTGGAT] [+] EMBL AK062474 [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTGGAT] consensusID : consensus_10790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTACCTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATCATCATCATCTTTGGATTCTCAGTTGTTAGTATTAGTGCTAAT] [-] EMBL BI796706 [GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTACCTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATCATCATCATCTTTGGATTCTCAGTTGTTAGTATTAGTGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10790#0 GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG 60 consensus_10790#1 GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG 60 consensus_10790#2 ------------------------------------------------------------ consensus_10790#0 TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG 120 consensus_10790#1 TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG 120 consensus_10790#2 -----------------GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTAC 43 * * ** * **** * * *** * * *** * consensus_10790#0 TGTTCTGCGTCGTCATCCTCTGCCTGT---CCGTGCTGTCCATGATCATCTTCGCCG--C 175 consensus_10790#1 TGTTCTGCGTCGTCATCCTCTGCCTGT---CCGTGCTGTCCATGATCATCTTCGCCG--C 175 consensus_10790#2 CTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATC 103 ** ** ** * ** * * ** ** * * * ** ** ** * consensus_10790#0 GGCCTCCCCCGGCGGGGAGCG-GCGGCG----GCGGCGGCGCTCCTCCTCCGGACCGGTG 230 consensus_10790#1 GGCCTCCCCCGGCGGGGAGCG-GCGGCG----GCGGCGGCG------------------- 211 consensus_10790#2 GCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCG------------------- 144 * * ** ****** * ** * ********* consensus_10790#0 TTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGC 290 consensus_10790#1 ------------------------------------------------------------ consensus_10790#2 ------------------------------------------------------------ consensus_10790#0 ACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGC 350 consensus_10790#1 ------------------------------------------------------------ consensus_10790#2 ------------------------------------------------------------ consensus_10790#0 GGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGA 410 consensus_10790#1 ------------------------------------------------GCTTTGCTCTGA 223 consensus_10790#2 ------------------------------------------------GCTTTGCTCTGA 156 ************ consensus_10790#0 AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAA-TGAGAGAAT 469 consensus_10790#1 AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAAT 283 consensus_10790#2 AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAA-TGAGAGAAT 215 ************************************************** ********* consensus_10790#0 AATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 529 consensus_10790#1 AATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 343 consensus_10790#2 AATTACTG-TCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 274 ******** *************************************************** consensus_10790#0 AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGT-AATTAAGTCTAATAATAATC 588 consensus_10790#1 AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGT-AATTAAGTCTAATAATAATC 402 consensus_10790#2 AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATC 334 *************************************** ******************** consensus_10790#0 ATCATCATCTTTTGGATTCTCAAAAAAAAAANAANNAAAANANAAAAANNAAAAAAAANC 648 consensus_10790#1 ATCATCATCTTT-GGAT------------------------------------------- 418 consensus_10790#2 ATCATCATCTTT-GGATTCTCAGTTGTTAGTATTAGTGCTAAT----------------- 376 ************ **** consensus_10790#0 CT 650 consensus_10790#1 -- consensus_10790#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||