cluster # 10802

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10802 cluster # 10802 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10802#0 length = 566 sequences # 7

consensus_10802#1 length = 294 sequences # 1

consensusID : consensus_10802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 566
fasta sequence

                              [CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG-ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG-ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG-ATGTAAAG-AATGTGGGTAACACTACCCTTTACATCACTCTATCT-TCCTTG-TCCCATGCATTGTTTACTCCAAT-AATTATTAACTTTTCAAGTTTTCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA]

[+] EMBL BI305713             [CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTTTTCAAGTTT                                   ]
[+] EMBL BU673019             [           gcataccTGCGGTTGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCGCACGACTTTATACAGCCGCTTGTTTCTCACGTCGCGGCATAGCAGCTGCACTATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGATACGCGCACCTCATGTAGCATGTAAAGCAATGTGGGTAACACTACCCTATACATCACTCTATCTATCCTTGATCCCATGCATTGTTTACTACACTAAATAATTAACTTAACACGTTATCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA]
[+] EMBL BU673720             [                                 CTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT                                            ]
[+] EMBL CB966946             [                                  TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT                                            ]
[+] EMBL CB964754             [                                   CGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT                                            ]
[+] EMBL BI305811             [                                    GTCGAGGGGCTCATGTTTGGGAACCCTCTC TCATGTTGCCCATCTTCACGGACC AGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTTTTCAAGTTT                                   ]
[+] EMBL CB965532             [                                    GTCGAGGGGCTCATG TTGGGAACCCTCTCATCATG TGCCCATCTTCACGGACCAA GGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGA                                                                                                                                                                                            ]




>consensus_10802#0
CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAAC
CCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGT
AACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGC
GTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCA
AGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCGAC
GACTTTATACAGCAGCTTGTTTCTCACGTCGCGGATAGCAGCTGCAATATTGCCACACCA
GTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCT
ACGCGCACCTCATGTTGATGTAAAGAATGTGGGTAACACTACCCTTTACATCACTCTATC
TTCCTTGTCCCATGCATTGTTTACTCCAATAATTATTAACTTTTCAAGTTTTCCCTCGTA
CCGAATACTTGGCCTCGGAGGGCCAA

consensusID : consensus_10802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCATGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCGTCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGCAGGTACCATCGGCACGCACTTCATACAG]

[+] EMBL CB966237             [TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCATGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCGTCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGCAGGTACCATCGGCACGCACTTCATACAG]




>consensus_10802#1
TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAG
GGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGC
ACACGGCACGGGTCGTTCGCACGCCATGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGT
GGAGGAAGCAAACAGGAGGGTGTTCGTCACAAGCGCCCTCAGGATGCAACAAGCATTGTC
ACTGCACAAGGCACACTCCATGCAGCAGGTACCATCGGCACGCACTTCATACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10802#0      CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAAC 60
consensus_10802#1      ----------------------------------TCGTCGAGGGGCTCATGTTTGGGAAC 26
                                                         **************************

consensus_10802#0      CCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGT 120
consensus_10802#1      CCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGT 86
                       ************************************************************

consensus_10802#0      AACAAGGTAGGGTTGC-AGGTG-AGGCGGGATG-ACACGG-ACGGGTCGTTCGACCGCCA 176
consensus_10802#1      AACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCA 146
                       **************** ***** ********** ****** ************  *****

consensus_10802#0      TGGCGTCGCAGCC-GCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCG 235
consensus_10802#1      TGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCG 206
                       ************* **************************** ** **************

consensus_10802#0      TAGCAAGCGCCCTCAGGATGCAAAAG--ATTGTCACTG-ACAAGGAAC--TCCATGAG-- 288
consensus_10802#1      TCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGC 266
                       *  ******************** *   ********** ****** **  ******    

consensus_10802#0      AGGTAC-ATCGACG---ACTTTATACAGCAGCTTGTTTCTCACGTCGCGGATAGCAGCTG 344
consensus_10802#1      AGGTACCATCGGCACGCACTTCATACAG-------------------------------- 294
                       ****** **** *    **** ******                                

consensus_10802#0      CAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAAT 404
consensus_10802#1      ------------------------------------------------------------
                                                                                   

consensus_10802#0      TCTTGTCGTAATGGCTACGCGCACCTCATGTTGATGTAAAGAATGTGGGTAACACTACCC 464
consensus_10802#1      ------------------------------------------------------------
                                                                                   

consensus_10802#0      TTTACATCACTCTATCTTCCTTGTCCCATGCATTGTTTACTCCAATAATTATTAACTTTT 524
consensus_10802#1      ------------------------------------------------------------
                                                                                   

consensus_10802#0      CAAGTTTTCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA 566
consensus_10802#1      ------------------------------------------