These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1058 fasta sequence [CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG------GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG-AACCAATCTTCCATCTACAAGGTA-GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC-GTC-AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA-CTA-GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA] [+] EMBL AK071567 [CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAACATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTATATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGT ] [+] EMBL C91668 [ ATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGG ] [+] EMBL AK059824 [ TCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGGGCCGCCGCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTATATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTT ] [-] EMBL CB629611 [ CAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTC ] [-] EMBL CB629612 [ TGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGATCTACGATGTGTACAAATACTGGATTGATTGTTGGCTGGATGCTCCATTAAAGCCTTTCTGTTCGTTGTT ] [+] EMBL BI811941 [ TGTGGCGTATGTCACCGAGGATAATAAGAAACCAATCTTCCATCTACAAGGTAGGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCACCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTCAAACTACGACGGTGCCGTGAAGAGCCTCCAGGA GCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTAC AATACTGGATTGATTGTTGGCTTGATGCTCCATTAAA CCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA] [+] EMBL BI813782 [ GCTCA CTAAGATCAGTCACT CTACGGCAAGCCACCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTCAGTC AACTACGACGGTCCCGTGAAGAGCCTCCAGGA GCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTCCCAAAAAAAAAA ] consensusID : consensus_10807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [TGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCTACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGGGATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTACCGCCGTGGCGGCCCTGGCCGTGGCTGACTCCGCGTCCGCCTTGGAATACATGGCG] [-] EMBL CB629610 [TGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCTACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGGGATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTACCGCCGTGGCGGCCCTGGCCGTGGCTGACTCCGCGTCCGCCTTGGAATACATGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10807#0 CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATT 60 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 TCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTC 120 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 CAAGGCGGACGCGGAGTCAGCCACGGCCAGGGCCGCCCGTCGTGTCGCCGCCCGTCTCCG 180 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 CCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGA 240 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 ATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCG 300 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 AGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGG 360 consensus_10807#1 ------------------------------------------------------------ consensus_10807#0 CGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGT 420 consensus_10807#1 -------------------------------------TGAAGGTGGATATGACAAGGTGT 23 *********************** consensus_10807#0 TCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACC 480 consensus_10807#1 TCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACC 83 ************************************************************ consensus_10807#0 TTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCAT 540 consensus_10807#1 TTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCAT 143 ******* * ************************************************** consensus_10807#0 TTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCT 600 consensus_10807#1 TTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCT 203 ************************************************************ consensus_10807#0 ACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGA 660 consensus_10807#1 ACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGA 263 ****************************************** ***************** consensus_10807#0 ACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGG 720 consensus_10807#1 ACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGG 323 ************************************************* ********** consensus_10807#0 GCTTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGG 780 consensus_10807#1 GATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGG 383 * ********************************************************** consensus_10807#0 CTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTC 840 consensus_10807#1 CTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTC 443 ************************************************************ consensus_10807#0 CGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACA 900 consensus_10807#1 CGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACA 503 ************************************************************ consensus_10807#0 GATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATT 960 consensus_10807#1 GATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATT 563 ************************************************************ consensus_10807#0 GTAT-GTAGTGTGTGGACTAGATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTC 1019 consensus_10807#1 GTACCGCCGTGGCGGCCCTGGCCGTG-GCTGACTCCGCGTCCGCCTTGGAATACATGGCG 622 *** * *** * ** * *** * * * * * * * * *** consensus_10807#0 CATTAAAGCCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA 1058 consensus_10807#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||