These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 891 fasta sequence [TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA-TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT-GCATCCGGTCGCGCTAGTTTCAAGG-CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT-GCAATTT-GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT-TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT-CCATCTT-TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT-CTTATTAC-GGCCA-CAAATCACAA-GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA] [-] EMBL AU057037 [TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACTGGCATCCGGTCGCGCTAGTTTCAAGGCCATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGGCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAG ] [-] EMBL CF303062 [ TCATGTACAAGCAAAATATTGAGGAAAACCAAATTTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTAT AATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGC ] [+] EMBL CB650787 [ CCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA] [-] EMBL BQ909059 [ tttTTTTTTTATCATGGAGAAAATTGCCGGATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAATGTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAA CCTTAA CTGAACTGGAACTTTCCAATTGATTGACTGGAATCCGGTAGTCAGCTTCCTTATTACGGGGCACCAATTCACAAGGTATTTGACCCGGGGGgttt ] [-] EMBL BI812498 [ TTTTTTTTTTGGGAGAAAATTTCCAAATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATG CG ACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATA TGGGGTACAAAACA TTTTG CTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT G ATCCGGTCGCGCTAGTTTCAAGG GATTTTGAGACATCA TTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGG TACAATCTTT GCAATTTGGTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGGCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGG CACGAATCATGGGCTCTG AAT TGTACCAGG CCCGCTTTGGTAATTATACAGTCACAAGCA CCATGGATTCTTCCCATCTTGTGTGACGAAA ] [-] EMBL AU057036 [ TAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT C ] [+] EMBL CA305874 [ AACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGTCAAACCAATCGGCTACAATCTTT GCAATTT GNTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCTGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT GCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTNCAATTGATTGACTGCAATCGGCTAGTCAGCTT NTTATTAC GGCCA CAAATC ] consensusID : consensus_10816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG] [+] EMBL CB650786 [CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10816#0 TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTC 60 consensus_10816#1 ------------------------------------------------------------ consensus_10816#0 TAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAATTGGATCATGACCTT 120 consensus_10816#1 -----------------------------------------CGCACTCGAATGTGACGCG 19 * * * ** **** consensus_10816#0 TTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGA-ATTCT--CACAGATAA 177 consensus_10816#1 CTCC-ACCGCGCC-ACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCG 77 * * * * * * *** * * ** * * ** * * * ** consensus_10816#0 ACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAG 237 consensus_10816#1 CCTCGTCGCTG--GCCGC------CGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTC 129 ** ** ** ***** ** * * *** * consensus_10816#0 GAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCA 297 consensus_10816#1 G---CTCCCGTCCCCGCTCCTCCCGGCCTCC----CCTCCCCTCCCCGCGGCCCCCGCCC 182 * * * * * * * * ** * * * * ** * * * * consensus_10816#0 GATCGTGGACAATTTTAAACACTGCATCCGGTCGCGCTAGTTTCAAGGCATTTTGAGACA 357 consensus_10816#1 CCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGC------GCGGTCGCCGTCT 236 ** * * ** * * *** * *** * ** * * * consensus_10816#0 TCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGCAATTTGTT 417 consensus_10816#1 CCGTATCCGTCTCGGCCTAC---GGCGCGGGCTCCACCGCCGCGG-CGTCGCGGCTC-CA 291 * * * **** * ** ** * * * ** * * * ** * consensus_10816#0 CTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTT 477 consensus_10816#1 CCGGATGTGGGCCGAGTTCTCCCGCTTCGTG--CGGCTGCACGGGAACCAAATCGCGCCG 349 * *** * ** * ** * * * * * ** * * ** * ** consensus_10816#0 CCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAA 537 consensus_10816#1 CTCGGGTTCGCGTCCCTCGGCCTGG-GCGTTGG--AGGCGGCGG-CGGTGGGAGCGGCGA 405 * * * ** * * *** **** ** *** * ** * consensus_10816#0 TTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATT--CTTCCAT 595 consensus_10816#1 AGGGGCCGG---CGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGA 462 * ** * * * * ** *** ** ** * consensus_10816#0 CTTTGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 655 consensus_10816#1 CGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 522 * *** ****************************************************** consensus_10816#0 AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 715 consensus_10816#1 AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 582 ************************************************************ consensus_10816#0 TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTC 775 consensus_10816#1 TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTC 642 *************************************** ** ************** consensus_10816#0 CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 835 consensus_10816#1 CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 702 ************************************************************ consensus_10816#0 TTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA 891 consensus_10816#1 TTCATCCTCTGGTCCAATAGG----------------------------------- 723 ************** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||