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Oryza sativa
cluster # 10816 cluster # 10816       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10816#0 length = 891 sequences # 7  
consensus_10816#1 length = 723 sequences # 1  

consensusID : consensus_10816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 891
fasta sequence
                              [TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA-TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT-GCATCCGGTCGCGCTAGTTTCAAGG-CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT-GCAATTT-GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT-TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT-CCATCTT-TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT-CTTATTAC-GGCCA-CAAATCACAA-GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA]

[-] EMBL AU057037             [TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACTGGCATCCGGTCGCGCTAGTTTCAAGGCCATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGGCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAG                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF303062             [                                                                        TCATGTACAAGCAAAATATTGAGGAAAACCAAATTTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTAT AATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGC                                                                                                                                  ]
[+] EMBL CB650787             [                                                                                                                     CCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA]
[-] EMBL BQ909059             [                                                                                                                    tttTTTTTTTATCATGGAGAAAATTGCCGGATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAATGTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAA CCTTAA CTGAACTGGAACTTTCCAATTGATTGACTGGAATCCGGTAGTCAGCTTCCTTATTACGGGGCACCAATTCACAAGGTATTTGACCCGGGGGgttt                                                                                                                                                                                        ]
[-] EMBL BI812498             [                                                                                                                        TTTTTTTTTTGGGAGAAAATTTCCAAATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATG CG ACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATA TGGGGTACAAAACA TTTTG CTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT G ATCCGGTCGCGCTAGTTTCAAGG GATTTTGAGACATCA TTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGG TACAATCTTT GCAATTTGGTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGGCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGG CACGAATCATGGGCTCTG AAT TGTACCAGG CCCGCTTTGGTAATTATACAGTCACAAGCA CCATGGATTCTTCCCATCTTGTGTGACGAAA                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU057036             [                                                                                                                                                                                                                     TAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT C                                                                                                                                                                                                                                     ]
[+] EMBL CA305874             [                                                                                                                                                                                                                                                                                                AACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGTCAAACCAATCGGCTACAATCTTT GCAATTT GNTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCTGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT GCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTNCAATTGATTGACTGCAATCGGCTAGTCAGCTT NTTATTAC GGCCA CAAATC                                                                                                                                                                                                                 ]


>consensus_10816#0 TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTC TAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAATTGGATCATGACCTT TTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACT AGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAG TTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGAT CGTGGACAATTTTAAACACTGCATCCGGTCGCGCTAGTTTCAAGGCATTTTGAGACATCA TTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGCAATTTGTTCTG GAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCT GACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAATTG TACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTTCCATCTTTG TAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCA GCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGT CATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTCCCCCC CACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCAT CCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA



consensusID : consensus_10816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence
                              [CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG]

[+] EMBL CB650786             [CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG]


>consensus_10816#1 CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGT CATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGC GTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGC CCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGT ATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTG GGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGC GTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGG AGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTT AACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACG GCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATC ACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAG AACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAAT AGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10816#0      TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTC 60
consensus_10816#1      ------------------------------------------------------------
                                                                                   

consensus_10816#0      TAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAATTGGATCATGACCTT 120
consensus_10816#1      -----------------------------------------CGCACTCGAATGTGACGCG 19
                                                                *  * * **   ****   

consensus_10816#0      TTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGA-ATTCT--CACAGATAA 177
consensus_10816#1      CTCC-ACCGCGCC-ACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCG 77
                        * * * *  *   *     ***    *  * **     * *  ** *   * * **   

consensus_10816#0      ACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAG 237
consensus_10816#1      CCTCGTCGCTG--GCCGC------CGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTC 129
                        ** **  **   *****             **     *    * ***   *        

consensus_10816#0      GAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCA 297
consensus_10816#1      G---CTCCCGTCCCCGCTCCTCCCGGCCTCC----CCTCCCCTCCCCGCGGCCCCCGCCC 182
                       *    *    * * * * * *   **  * *    * *     **   *   * *   * 

consensus_10816#0      GATCGTGGACAATTTTAAACACTGCATCCGGTCGCGCTAGTTTCAAGGCATTTTGAGACA 357
consensus_10816#1      CCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGC------GCGGTCGCCGTCT 236
                         ** *  *     **   *    *   *** * ***  *       **  *    * * 

consensus_10816#0      TCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGCAATTTGTT 417
consensus_10816#1      CCGTATCCGTCTCGGCCTAC---GGCGCGGGCTCCACCGCCGCGG-CGTCGCGGCTC-CA 291
                        * * *    **** *  **   **  *   *    * **  *   * * **   *    

consensus_10816#0      CTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTT 477
consensus_10816#1      CCGGATGTGGGCCGAGTTCTCCCGCTTCGTG--CGGCTGCACGGGAACCAAATCGCGCCG 349
                       * ***  *     **  *  **   * * *   *  *  **   * * **   *  **  

consensus_10816#0      CCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAA 537
consensus_10816#1      CTCGGGTTCGCGTCCCTCGGCCTGG-GCGTTGG--AGGCGGCGG-CGGTGGGAGCGGCGA 405
                       *  *        *   **    * *     ***  ****  **     ***   * ** *

consensus_10816#0      TTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATT--CTTCCAT 595
consensus_10816#1      AGGGGCCGG---CGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGA 462
                         *  ** *   * *     *         **            ***  **  **  *  

consensus_10816#0      CTTTGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 655
consensus_10816#1      CGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 522
                       * *** ******************************************************

consensus_10816#0      AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 715
consensus_10816#1      AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 582
                       ************************************************************

consensus_10816#0      TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTC 775
consensus_10816#1      TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTC 642
                       *************************************** **    **************

consensus_10816#0      CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 835
consensus_10816#1      CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 702
                       ************************************************************

consensus_10816#0      TTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA 891
consensus_10816#1      TTCATCCTCTGGTCCAATAGG----------------------------------- 723
                       ************** ******                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)