These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1300 fasta sequence [GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAGCGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCATGGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGAAATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCTCCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGACAGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAATTAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGAGATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAGTTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACAAACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC-GGAACAGAGGTGGTGGTGGTG-GCGGGGGCC-G-TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT-CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC-GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA-CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA-CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT] [+] EMBL AK072498 [GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAGCGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCATGGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGAAATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCTCCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGACAGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAATTAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGAGATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAGTTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACAAACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT] [+] EMBL AU030173 [ cacgctccGCNAATTTCAAACAGATTCATAT GGCNCGCCCTTGTTAGAGCCAGAGGAAGAGGAAGGGTTTGGGTTGTTAGGGAAGGCTATGGTGGAGGNTATGGTGGATATGATAACANCCAAGGA GTTATGGTGGATATGGACACCAGGTTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGNTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC N TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGTCCCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCAaaaa ] [+] EMBL AU030172 [ AACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAANGTGGATATGGAGGATATGAAAATGGTGGCTGG ACTACAACCAGGAACAGANGTGGTTGTTGTGNCCGGGGGCC GTTGGAA AAGCACTTNGGGATAT ] [+] EMBL C27744 [ GGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGCGGGCAGAGGCTATTCCCGGGGCCG ] [+] EMBL BI799066 [ ACTACCAAGGA GTTAT GTGGATAT GACACCAGGGTGGATATGGACACCAA GGGGGTAT GCAACCAGGGAGGATAT GCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGA GTGTTGGT GTT GC GGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAACCCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTTCTGTATGAAGAACAAAAACTGTGGATGTGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATC ATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAaaaaa ] [+] EMBL CB684874 [ GGGTCGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGC ] [+] EMBL BM418587 [ tTTATGGAGGTTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGT GCTGGAACTACAACC GGAACAGA GTGTTGGT GT GCGGGGGCCAG TGGAAGA GCCACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCA GT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CC AAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGATCGTTGGGTTCTGTATGAAGAAC AAAACTGTGGATGTGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATC ATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCT CCATTGCTTCGATTCTGT GGATTTTGACAAGAATGTTAAGTTTTACCCTTGGACATATTTTCCTGTAaaaaa ] consensusID : consensus_10820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [TGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGGCTGTGCGACTCTACACC] [+] EMBL OS37982 [TGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGGCTGTGCGACTCTACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10820#0 GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAG 60 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 CGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCAT 120 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 GGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGA 180 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 AATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCT 240 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 CCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGAC 300 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 AGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAAT 360 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 TAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGA 420 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 GATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAG 480 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 TTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACA 540 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 AACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTC 600 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 ATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGG 660 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 CTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACA 720 consensus_10820#1 ---------------------------------------------TGGTGGATATGGACA 15 *************** consensus_10820#0 CCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCA 780 consensus_10820#1 CCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCA 75 ************************************************************ consensus_10820#0 AGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGG 840 consensus_10820#1 AGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGG 135 **** * *** ******** ******************** * ** ** * ** * ** consensus_10820#0 CTGGA--ACTACA-ACCGGAACAGAGGTGGTGGTGGTGGCGGGGGCCGTGGAAGAGGCAA 897 consensus_10820#1 CTGTGCGACTCTACACC------------------------------------------- 152 *** *** * *** consensus_10820#0 CTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGTCCGGCATATGAACGTGGTGG 957 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 CAGAGGTGGAGGTAGCCCAGGCGGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGG 1017 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 TGGCCGTGGGCGAGGCAACCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGG 1077 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 TCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCT 1137 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 AGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGG 1197 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 TGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTACCTTGGAC 1257 consensus_10820#1 ------------------------------------------------------------ consensus_10820#0 ATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT 1300 consensus_10820#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||