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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1300 fasta sequence
[GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAGCGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCATGGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGAAATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCTCCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGACAGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAATTAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGAGATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAGTTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACAAACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC-GGAACAGAGGTGGTGGTGGTG-GCGGGGGCC-G-TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT-CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC-GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA-CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA-CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT]
[+] EMBL AK072498 [GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAGCGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCATGGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGAAATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCTCCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGACAGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAATTAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGAGATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAGTTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACAAACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT]
[+] EMBL AU030173 [ cacgctccGCNAATTTCAAACAGATTCATAT GGCNCGCCCTTGTTAGAGCCAGAGGAAGAGGAAGGGTTTGGGTTGTTAGGGAAGGCTATGGTGGAGGNTATGGTGGATATGATAACANCCAAGGA GTTATGGTGGATATGGACACCAGGTTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGNTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC N TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGTCCCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCAaaaa ]
[+] EMBL AU030172 [ AACAGATTCATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAANGTGGATATGGAGGATATGAAAATGGTGGCTGG ACTACAACCAGGAACAGANGTGGTTGTTGTGNCCGGGGGCC GTTGGAA AAGCACTTNGGGATAT ]
[+] EMBL C27744 [ GGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGCGGGCAGAGGCTATTCCCGGGGCCG ]
[+] EMBL BI799066 [ ACTACCAAGGA GTTAT GTGGATAT GACACCAGGGTGGATATGGACACCAA GGGGGTAT GCAACCAGGGAGGATAT GCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGA GTGTTGGT GTT GC GGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAACCCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTTCTGTATGAAGAACAAAAACTGTGGATGTGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATC ATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAaaaaa ]
[+] EMBL CB684874 [ GGGTCGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACC GGAACAGAGGTGGTGGTGGTG GCGGGGGCC G TGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGGTCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTA CCTTGGACATATTTTCCTGTATTTAAGAGTGC ]
[+] EMBL BM418587 [ tTTATGGAGGTTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGT GCTGGAACTACAACC GGAACAGA GTGTTGGT GT GCGGGGGCCAG TGGAAGA GCCACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCA GT CCGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGC GGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGTGGCCGTGGGCGAGGCAA CC AAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGATCGTTGGGTTCTGTATGAAGAAC AAAACTGTGGATGTGTTCTCCATAGGACGGAACCCTAGCTGTTTCTTTGTGATC ATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCT CCATTGCTTCGATTCTGT GGATTTTGACAAGAATGTTAAGTTTTACCCTTGGACATATTTTCCTGTAaaaaa ]
consensusID : consensus_10820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence
[TGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGGCTGTGCGACTCTACACC]
[+] EMBL OS37982 [TGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCAAGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGGCTGTGCGACTCTACACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10820#0 GGGTTTTAAGCCTCACCCAAACCGCCTCAGCCGCTCCCCTCTCCCCTTCGACAACAGCAG 60
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 CGCCGCCGCCGCCGCAGGAGCCGCATCGCCGGGGGTTCGCCGGAGGGAGGGAGTAGCCAT 120
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 GGATCGGTACCAGCGGGTGGAGAAGCCGCGGCCCGAGGCCGCCGTCATCAGCGAGAACGA 180
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 AATCCGCATCACCACCCAGGGCCTCATCCGCAACTACGTCACCTACGCCACCTCCCTCCT 240
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 CCAGGAAAAGCGCGTGAAAGAAATAGTGTTGAAGGCTATGGGACAGGCTATCAGCAAGAC 300
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 AGTGGCTATTGCTGAGATCATAAAGAAACGGATCCCTGGGTTGCATCAAGATACATCAAT 360
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TAGTTCAGTCAGTATTACTGATGTATGGGAACCCATTGAGGAAGGCCTTGTACCATTGGA 420
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 GATGACTCGTCATGTTTCAATGATATCAATTTCCCTGTCACCGAAGGAGCTTAACAAGAG 480
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TTCAGCTGGGTATCAAGCTCCCTTGCATGCAGAGCCAATTAAGCCACAAAGATACCAACA 540
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 AACCCAGCAATATCAACAACAACAGCACCAGTCTAGGCCAAGCCAAGTTCAAACAGATTC 600
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 ATATGGGCGCGGCCGTGGTAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGG 660
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 CTATGGTGGAGGGTATGGTGGATATGATAACAACCAAGGAGGTTATGGTGGATATGGACA 720
consensus_10820#1 ---------------------------------------------TGGTGGATATGGACA 15
***************
consensus_10820#0 CCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCA 780
consensus_10820#1 CCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAATCA 75
************************************************************
consensus_10820#0 AGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGG 840
consensus_10820#1 AGGTTGGTATTGAGGGTATTGTTACAACCAAGGTGGATATTGGGGGTAAGTGAAATGGGG 135
**** * *** ******** ******************** * ** ** * ** * **
consensus_10820#0 CTGGA--ACTACA-ACCGGAACAGAGGTGGTGGTGGTGGCGGGGGCCGTGGAAGAGGCAA 897
consensus_10820#1 CTGTGCGACTCTACACC------------------------------------------- 152
*** *** * ***
consensus_10820#0 CTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGTCCGGCATATGAACGTGGTGG 957
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 CAGAGGTGGAGGTAGCCCAGGCGGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGG 1017
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TGGCCGTGGGCGAGGCAACCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGG 1077
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TCGTTGGGTGCTGTATGAAGAACAAAAACTGTGGATGCGTTCTCCATAGGACGGAACCCT 1137
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 AGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGG 1197
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 TGTCTGCCATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTACCTTGGAC 1257
consensus_10820#1 ------------------------------------------------------------
consensus_10820#0 ATATTTTCCTGTATTTAAGAGTGCATTTTTGAATAGCTTGTCT 1300
consensus_10820#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||