cluster # 10828

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10828 cluster # 10828 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10828#0 length = 518 sequences # 2

consensus_10828#1 length = 454 sequences # 6

consensusID : consensus_10828#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 518
fasta sequence

                              [CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM038457             [CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAA                         ]
[+] EMBL AU092785             [                                                                                                                                                                                                                                                                                                            TGACGCCTCACTTCCCCTTCCNTTTCCGGCCCGGCCTACTGTAATTCTGTNAAGATNTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCNGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10828#0
CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCT
CAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGC
CGAGGTGGTCGTCCCCAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAC
GGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGA
CGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCG
TGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCA
TCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGT
TATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCGCATATATTAACT
CTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10828#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 454
fasta sequence

                              [GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC-AGGGGAGCAGCAAGGAGGAGGA-GGGGAAGACGACGACGAAGGCGAA-GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC-AGATTATG-TTTTTGTAGCTTCTGTGGCAGATT-AGGTGATGGTTAATCATAT-GGTTATGCTTCCGTAGTGTGTAAAAAA]

[+] EMBL AU094989             [GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAAA]
[+] EMBL AU029833             [cngngnACGCGTGGGCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCANCAGCACAAAGTGTCAGTNAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTNACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTNAAGCAGCNGGGGGACCAGCAAGGAGGAGGAGGGGGAAAACGACGACGAAG                                                                                                                                                                                                         ]
[+] EMBL AU164046             [                AAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAAA]
[+] EMBL OSC3611              [                       AAGAGCAGACAGAGCTGCAGCAGCA CAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGGCTCACTTNCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAAGATTATG TTTTTGTAGCTTCTGTGGCAGATTAAGGTGATGGTTAATCATATGGGTAATGCTT                 ]
[+] EMBL C27966               [                           GCAGACAGAGCTGCAGCAGCNGANGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAANGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGNCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATGTTTTTTGTAGCTTCTGTGG                                                      ]
[+] EMBL AU057342             [                                CAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAA ]




>consensus_10828#1
GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGT
GTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATG
TCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGAT
TGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGCAGGGGAGCAGCAAGGAGGAGGAG
GGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGC
GCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGT
AAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTA
ATCATATGGTTATGCTTCCGTAGTGTGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10828#0      -----------CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGT 49
consensus_10828#1      GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGT 60
                                      * * **    *  ********************************

consensus_10828#0      GTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATG 109
consensus_10828#1      GTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATG 120
                       ************************************************************

consensus_10828#0      TCGTCGCACGCCGAGGTGGTCGTCCCCA-GAAGCCCGGCGACTGTGACGACGACGACGAT 168
consensus_10828#1      TCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGAT 180
                       **************************** *******************************

consensus_10828#0      TGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGG 228
consensus_10828#1      TGCAGCAAGCA-GGAGTAGCAGAAGAAGGTGAAGCAGCA-GGGGAGCAGCAAGGAGGAGG 238
                       *********** *************************** ********************

consensus_10828#0      AGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATG 288
consensus_10828#1      AGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATG 298
                       ************************************************************

consensus_10828#0      GCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCT 348
consensus_10828#1      GCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCT 358
                       ************************************************************

consensus_10828#0      GTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGT 408
consensus_10828#1      GTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGT 418
                       ************************************************************

consensus_10828#0      TAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCG 468
consensus_10828#1      TAATCATATGGTTATGCTTCCGTAGTGTGTAAAAAA------------------------ 454
                       ********************************                            

consensus_10828#0      CATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 518
consensus_10828#1      --------------------------------------------------