These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1246 fasta sequence [CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCATGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGGGGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATATTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAGATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGGATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGACTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA-TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTGGCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA] [+] EMBL AK059584 [CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCATGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGGGGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATATTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAGATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGGATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGACTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACA ] [-] EMBL CB619993 [ ATCC TTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTcc ] [+] EMBL OSS0954A [ AACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGNGTTAGCACTGNCACTNGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCNCCAAGGTGTATA ] [-] EMBL CB620032 [ CGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAGGTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATTTTTACGGAATCTGTGAAAGTGGAAGA ] [-] EMBL CB677172 [ CTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAAGGTGCAAAGGTATAG ] [-] EMBL CB670030 [ GTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTGGCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA] [+] EMBL AU174178 [ GAGTGGGTACAGAAGAGATTTAAACCTATTAGGCNAGGAGATNCGGATGNCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAaa ] consensusID : consensus_10833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACCTATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCATGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAAAAAAAAAAAA] [-] EMBL CA761791 [GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACCTATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCATGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10833#0 CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCA 60 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 TGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGG 120 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 GGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATA 180 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 TTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAG 240 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 ATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGG 300 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 ATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGA 360 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 CTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTG 420 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 ATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTAT 480 consensus_10833#1 ------------------------------------------------------------ consensus_10833#0 GGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGT 540 consensus_10833#1 -GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGT 59 ******************************* * *********************** consensus_10833#0 CAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGG 600 consensus_10833#1 CAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGG 119 ************************************************************ consensus_10833#0 TAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCT 660 consensus_10833#1 TAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCT 179 ************************************************************ consensus_10833#0 CCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACC 720 consensus_10833#1 CCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACC 239 ************* ********************************************** consensus_10833#0 TATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTG 780 consensus_10833#1 TATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTG 299 **************** ******************************************* consensus_10833#0 CCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCA 840 consensus_10833#1 CCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCA 359 **************************************************** ******* consensus_10833#0 TGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTT 900 consensus_10833#1 TGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTT 419 **************************** ******************************* consensus_10833#0 TGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGAT 960 consensus_10833#1 TGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGAT 479 ************************************************************ consensus_10833#0 CCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTA 1020 consensus_10833#1 CCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTA 539 ************************************** ********************* consensus_10833#0 GAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGG 1080 consensus_10833#1 GAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGG 599 ************************************************************ consensus_10833#0 AAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAA 1140 consensus_10833#1 AAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAA 659 ********************************************** ************* consensus_10833#0 TCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTG 1200 consensus_10833#1 TCTGTGAAAAAAAAAAAAAA---------------------------------------- 679 ********* ** * consensus_10833#0 GCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA 1246 consensus_10833#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||