These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 976 fasta sequence [CTTGGCTACTGCATTGCAGGGAAGGAGAAGCTCCTGCTGTACGAGTACATGGAGAAAGGCGACCTCCACCGGTGGCTGCACGAGCTTCCAGCAGGGCGGCCCGACATGGAGGACGACACCGGCGGTGACATCTGGGAGGTGGCGGAGGACAAGCGGTCCATCTCCGACTGGCCGACCCGGCAC-CG-CATCGCGCTAGGGATCGCCCGAGGGCTCGCGTTCCTGCACCAAGGGTGGGCAGGGTCGGGTCGGCCGGTCGTGCACGGTCATCTGGTCCCAACCAACATCCTCCTCGGCGAAGACCTAGAGCC-TCGGATATCCGACTTCGGGCCACCCTAGCGACACGA-CGCCAGAGGGGGATGTGTACAGCTTCGGCGTGCTGGTGCTCGAGCTCATAACCGGCCAAGCC-GGCT-GGGACGAAGCGTCAGTTAGCTGGGCGCGGGGGATCATCCGCGACCAGAAGGGTCTAGACATCGTGGACCCGAGAGTGCGGGACGAGGCGGGCGGCGGGCCGGAGACGTCGACGGTGGAGCGGGAGATGGTGGAGTGCCTGCGGGTGGGGTACTCTGCACCGCGCAG-TCGCCGGAGAAGAGGCCGACGATGCAGCAGGTGGTGGGGGTGCTCAAGGACAT-CCGGGTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCGCAATTGGGACCCGCCGTCGCCTGAGAAGAGATCCCAGTGTGGCAGCCTTT-CTGATCTGGTAGACAAGCCTTGGTGGTCGGTAGTAGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTTGTTTTTACTTTGGTGGATTTATTGCGTTGGGCAGGAACATCAACAGTTTTGGTACTGTATTTAATTGCAAGCCGCCATGAGNNNTNNNGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22566 [CTTGGCTACTGCATTGCAGGGAAGGAGAAGCTCCTGCTGTACGAGTACATGGAGAAAGGCGACCTCCACCGGTGGCTGCACGAGCTTCCAGCAGGGCGGCCCGACATGGAGGACGACACCGGCGGTGACATCTGGGAGGTGGCGGAGGACAAGCGGTCCATCTCCGACTGGCCGACCCGGCAC CG CATCGCGCTAGGGATCGCCCGAGGGCTCGCGTTCCTGCACCAAGGGTGGGCAGGGTCGGGTCGGCCGGTCGTGCACGGTCATCTGGTCCCAACCAACATCCTCCTCGGCGAAGACCTAGAGCC TCGGATATCCGACTTCGGGCCACCCTAGCGACACGA CGCCAGAGGGGGATGTGTACAGCTTCGGCGTGCTGGTGCTCGAGCTCATAACCGGCCAAGCCGGGCT GGGACGAAGCGTCAGTTAGCTGGGCGCGGGGGATCATCCGCGACCAGAAGGGTCTAGACATCGTGGACCCGAGAGTGCGGGACGAGGCGGGCGGCGGGCCGGAGACGTCGACGGTGGAGCGGGAGATGGTGGAGTGCCTGCGGGTGGGGTACTCTGCACCGCGCAG TCGCCGGAGAAGAGGCCGACGATGCAGCAGGTGGTGGGGGTG TCAAGGACAT CCGGGTGGCA CTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCG AATTGGGACCCGCCGTCGCCTGAGAAGAGATTCCAGTGTGGAAGCCTTT CTGATCTGGTAGACAAGCCTTGGTGGTCGGTAGTAGAAACACATGT ] [+] EMBL C22574 [CTTGGCTACTGCATTGCAGGGAAGGAGAAGCTCCTGCTGTACGAGTACATGGAGAAAGGCGACCTCCACCGGTGGCTGCACGAGCTTCCAGCAGGGCGGCCCGACATGGAGGACGACACCGGCGGTGACATCTGGGAGGTGGCGGAGGACAAGCGGTCCATCTCCGACTGGCCGACCCGGCACNAA NATCGCGCTAGGGATCGCCCGAGGGCTCGCGTTCCTGCACCAAGGGTGGGCAGGGTCGGGTCGGCCGGTCGTGCACGGTCATCTGGTCCCAACCAACATCCTCCTCGGCGAAGACCTAGAGCC TCGGATATCCGACTTTCGGCCACCCTAGCGACACGA CGCCAGAGGGGGATGTGTACAGCTTCGGCGTGCTGGTGCTCGAGCTCATAACCGGCCAAGCC GGCT GGGACGAAGCGTCAGTTAGCTGGGCGCGGGGGATCATCCGCGACCAGAAGGGTCTAGACATCGTGGACCCGAGAGTGCGGGACGAGGCGGGCGGCGGGCCGGAGACGTCGACGGTGGAGCGGGAGATGGTGGAGTGCCTGCGGGTGGGGTACTCTGCACCGCGCAG TCGCCGGAGAAGAGGCCGACGATGCAGCAGGTGGTGGGGGTGCTCAAGGACAT CCGGGTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCGCAATTGGGACCCGCCGTCG CTGAGAAGAGATTCCAGTGTGGCAG CTTT CTGATCTGGTA ACAAGCCTTGGTGGTCGGTAGTAG AACACATG ] [+] EMBL C22492 [CTTGGCTACTGCATTGCAGGGAAGGAGAAGCTCCTGCTGTACGAGTACATGGAGAAAGGCGACCTCCACCGGTGGCTGCACGAGCTTCCAGCAGGGCGGCCCGACATGGAGGACGACACCGGCGGTGACATCTGGGAGGTGGCGGAGGACAAGCGGTCCATCTCCGACTGGCCGACCCGGCAC CGACATCGCGCTAGGGATCGCCCGAGGGCTCGCGTTCCTGCACCAAGGGTGGGCAGGGTCGGGTCGGCCGGTCGTGCACGGTCATCTGGTCCCAACCAACATCCTCCTCGGCGAAGACCTAGAGCCTTCGGATATCCGACTTTGGGNCACCCTAGCGACACGAGCGCCA ] [+] EMBL C22564 [ TTGGCTACTGCATTGCAGGGAAGGAGAAGCTCCTGCTGTACGAGTACATGGAGAAAGGCGACCTCCACCGGTGGCTGCACGAGCTTCCAGCAGGGCGGCCCGACATGGAGGACGACACCGGCGGTGACATCTGGGAGGTGGCGGAGGACAAGCGGTCCATCTCCGACTGGCCGACCCGGCAC GG NATCGCGCTAGGGATCGCCCGAGGGCTCGCGTTCCTGCACCAAGGGTGGGCAGGGTCGGGTCGGCCGGTCGTGCACGGTCATCTGGTCCCAACCAACATCCTCCTCGGCGAAGACCTAGAGCC TCGGATATCCGACTTC GGCCACCCTAGCGACACGA CGCCAGAGGGGGATGTGTACAGCTTCGGCGTGCTGGTGCTCGAGCTCATAACCGGCCAAGCC GGCTGGGGACGAAGCGTCAGTTAGCTGGGCGCGGGGGATCATCCGCGACCAGAAGGGTCTA ] [+] EMBL AU029810 [ CAGTTCGCCGGAGAAGAGGCCGACGATNCAGCAGGTGGTGGGGGTGCTCAAGGACATCCCGGGTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCGCAATTGGGACCCGCCGTCGCCTGAGAAGAGATCCCAGTGTGGCAGCCTTTCCTGATCTGGTAGACAAGCCTTGGTGGTCGGTAGTAGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTTGTTTTTACTTTGGTGGATTTATTGCGTTGGGCAGGAACATCAACAGTTTTGGTACTGTATTTAATTGCAAGCCGCCATGAGNNNTNNNGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22567 [ AGGCCGACGATGCAGCAGGTGNTGGGGGTGCTCAAGGACAT CCGGNTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCGCAATTGGGACCCGCCGTCGCCTGAGAAGAGATCCCAGTGTGGCAGCCTTTCCTGATCTGGTAGACAAGCCTTGGTGGTCGGTAGTAGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTTGTTTTTACTTTGGTGGATTTATTGCGTTGGGCAGGAACATCAACAGTTTTGGTACTGTATTTAATTGCAAGCCGCCATGAGGNNTNCNGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22575 [ AGNCCGACGATGCAGCAGGTGGTGGGGNTGCTCAAGGACAT CCGGGTGGCACCTGCCAGCAGCTCATCCACTTGACGGTGGTGGAGCAGCGCCATCGTGTGTGTCCGTCGCAATTGGGACCCGCCGTCGCCTGAGAAGAGATCCCAGTGTGGCAGCCTTTCCTGATCTGGTAGACAAGCCTTGGTGGTCGGTAGTAGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTTGTTTTTACTTTGGTGGATTTATTGCGTTGGGCAGGAACATCAACAGTTTTGGTACTGTATTTAATTGCAAGCCGCCNTGAGNNNTNNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22493 [ ATCTGGTAGACAAGCCTTGGTGGTCGGTAGTNGAAACACATGTGCATGTAACAATTTTTTCTCGCCGGTAAAACAGTTGGTTTCAGAGCCCCTTGTCTCTCTTGTTTTTNCTTTGGTGGATTTATTGCGTTGGGCAGGAACNTCAACAGTTTTGGTACTGTATTTAATTGCAAGCCGCNATNNNNNNTNNCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||