These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 670 fasta sequence [GGGN-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACCATCACCCAGGGGGGAGAGGGAAAGGGGCTGTATATGTA] [-] EMBL CA757873 [GGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACAGGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCT ] [-] EMBL CB000428 [ TTTTTTTTTTTTAACAAAAGGGGCATTCCTCATCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGG ] [+] EMBL CB674743 [ gcAACAAAAGGGGCATGCCCCCTTTAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGAC ] [+] EMBL CB680843 [ GGCGTATGCCTCCTCAAATCTCCTTGGTGATCGATCACTGGACACATAACGTTAAATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAAATGGATGGAATGCGAAATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCCAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAAAACAAACGACGGGATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGGAGTAGTAGTAGTAGTAGTAGGGACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACCACCATCACCCAGGGGGGAGAGGGAAAGGGGCTGTATATGTA] [+] EMBL CB637561 [ CTCTC TTGGA TACATGGA AA A GG TGGAATGCGAGATT AAGAAAAAAAAACATGCTTCTTCTCTCC TCAACCAAATT TTTCAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTA ] [-] EMBL CA999034 [ AAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAG GTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACg ] consensusID : consensus_10838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGAAAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATGGAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACGTTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGACGGGCGGNTTTCTT] [-] EMBL C96859 [TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGAAAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATGGAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACGTTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGACGGGCGGNTTTCTT] consensusID : consensus_10838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTTTTTTTTTTGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGGTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA] [-] EMBL AU029776 [TTTTTTTTTTTGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGGTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10838#0 GGGNTTTTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTTTTTTT 42 consensus_10838#2 ------------------------------------------------------------ consensus_10838#1 ---TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGA 57 consensus_10838#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTT 102 consensus_10838#2 ------------------TTTTTTTTTT-------------TGCCTCCTCAAATCTCCTT 29 consensus_10838#1 AAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTT 117 * ******************* consensus_10838#0 GTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATG 162 consensus_10838#2 GTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATG 89 consensus_10838#1 GTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATG 177 ******** ********************* ****** ********************** consensus_10838#0 GAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAA 222 consensus_10838#2 GAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAA 149 consensus_10838#1 GAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAA 237 ****** *** *********** ******************** **************** consensus_10838#0 CCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCT 282 consensus_10838#2 CCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCT 209 consensus_10838#1 CCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCT 297 ************************** ********************************* consensus_10838#0 CAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGG-AAAACATGGATCAAAGAACG 341 consensus_10838#2 CAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGG-AAAACATGGATCAAAGAACG 268 consensus_10838#1 CAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACG 357 ******** ****************************** ********* * *** *** consensus_10838#0 ATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGA 401 consensus_10838#2 GTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGA 328 consensus_10838#1 TTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGA 417 **************** **** ** ** *** ** ******* *** ** ********* consensus_10838#0 CGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCA 461 consensus_10838#2 CGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA--- 385 consensus_10838#1 CGGGCGGNTTTCTT---------------------------------------------- 431 *** ** ****** consensus_10838#0 GACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCC 521 consensus_10838#2 ------------------------------------------------------------ consensus_10838#1 ------------------------------------------------------------ consensus_10838#0 AAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGT 581 consensus_10838#2 ------------------------------------------------------------ consensus_10838#1 ------------------------------------------------------------ consensus_10838#0 CAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACCATCACCCAG 641 consensus_10838#2 ------------------------------------------------------------ consensus_10838#1 ------------------------------------------------------------ consensus_10838#0 GGGGGAGAGGGAAAGGGGCTGTATATGTA 670 consensus_10838#2 ----------------------------- consensus_10838#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||