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Oryza sativa
cluster # 10840 cluster # 10840       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10840#0 length = 2393 sequences # 7  
consensus_10840#1 length = 748 sequences # 1  

consensusID : consensus_10840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2393
fasta sequence
                              [ACGAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCTCCTTCTCCTTCCCATCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCAGCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAAGAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCGGAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCGCCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGAGCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCTGCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCATCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGTTTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCATAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGAGGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCATTGACAGCACTTATTTTTGGCAGGTAAATTCTAACGCCAGTATCTCAAATGTTTATTCCAGTGGTACAATGCACTATTGAGTCATTAATCGATGCTACTTTAATGCGAAAAGTTTCTCAAGTCTGTACTGAAATTTTCCATTCATGACATCATTTTGTAATCCAGTAGCCTCTGCTAGTTAGTATCCAAACCACTAGTGGCAGAGAAATGAGTATTAGCATTTAAAGTCAAGCTGACTCAATTATGAGGTGTTTCTGCAACTTCAATTAGTTATTAGATACTATTTTAGCTGATTTGTGAATGGAAATAATTTTTTATCCATCGGCTATTTCACATTTTTTTAGAGAACAAATCATATATTAACCCGGCTTTGCATTAAAGCCCAACATAACAAGGTTCGACATTTTTAGCTGATTTGTGAATGGAAATAACTCCTTTCTCATTTTTCATCCATCGGCTAGTTCACTTTTTTTTAGAGAACAGATCATATATTGACCCAGCTTTGCAAGAAAGCTAACATAACAAACAGACCATATATTGACCTGGCTTTGCAAGAAAGCCAACATAACAAGGTTTAAAAAAAAGCGATATCGCCCACCGTGGGGCTTGAACCCACAACCACAAGGTTAAGAGCCTTGCGCTCTACCGACTGAGCTAGACGGGCTTTTGGCTGTTTCACATTTATTGCTTCATTGTCCAATATCACAACAAAGCGCAAAGTTCTTTCCTGCTCCTTAATAAGTTGGTTGTGTTGCCTTAGTTGCTTGACAATCTTTAGATCAATTATATCATTTTGCATATTATGGTGAATATACCTCATTTGAATGGCAGGACATTGCTCGTTGCAAATGCAGGAGACTGTCGAGCGGTATTAGGGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTTGGTGGTACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGGCACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAGGTTAGACTCACCGAAGAAGATGAGTTCTTAAT-AATCGGCTGTGACGGGC--TTTGGGATGTGATGACCAGCCAGTGCGCTGTCA-CAATGGTAAGGAAAGAGCTGATGACACACAACGATCCGGAAAGATGCTCG-CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA-TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG-TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTCATATTCTGGTACAAGTG-CCAGTTATAATAGTTGATCAGT-TTTGTTCTA----AAAAAAAAAA]

[+] EMBL AK063496             [ACGAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCTCCTTCTCCTTCCCATCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCAGCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAAGAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCGGAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCGCCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGAGCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCTGCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCATCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGTTTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCATAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGAGGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCATTGACAGCACTTATTTTTGGCAGGTAAATTCTAACGCCAGTATCTCAAATGTTTATTCCAGTGGTACAATGCACTATTGAGTCATTAATCGATGCTACTTTAATGCGAAAAGTTTCTCAAGTCTGTACTGAAATTTTCCATTCATGACATCATTTTGTAATCCAGTAGCCTCTGCTAGTTAGTATCCAAACCACTAGTGGCAGAGAAATGAGTATTAGCATTTAAAGTCAAGCTGACTCAATTATGAGGTGTTTCTGCAACTTCAATTAGTTATTAGATACTATTTTAGCTGATTTGTGAATGGAAATAATTTTTTATCCATCGGCTATTTCACATTTTTTTAGAGAACAAATCATATATTAACCCGGCTTTGCATTAAAGCCCAACATAACAAGGTTCGACATTTTTAGCTGATTTGTGAATGGAAATAACTCCTTTCTCATTTTTCATCCATCGGCTAGTTCACTTTTTTTTAGAGAACAGATCATATATTGACCCAGCTTTGCAAGAAAGCTAACATAACAAACAGACCATATATTGACCTGGCTTTGCAAGAAAGCCAACATAACAAGGTTTAAAAAAAAGCGATATCGCCCACCGTGGGGCTTGAACCCACAACCACAAGGTTAAGAGCCTTGCGCTCTACCGACTGAGCTAGACGGGCTTTTGGCTGTTTCACATTTATTGCTTCATTGTCCAATATCACAACAAAGCGCAAAGTTCTTTCCTGCTCCTTAATAAGTTGGTTGTGTTGCCTTAGTTGCTTGACAATCTTTAGATCAATTATATCATTTTGCATATTATGGTGAATATACCTCATTTGAATGGCAGGACATTGCTCGTTGCAAATGCAGGAGACTGTCGAGCGGTATTAGGGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTTGGTGGTACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGGCACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAGGTTAGACTCACCGAAGAAGATGAGTTCTTAAT AATCGGCTGTGACGGGC  TTTGGGATGTGATGACCAGCCAGTGCGCTGTCA CAATGGTAAGGAAAGAGCTGATGACACACAACGATCCGGAAAGATGCTCG CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTAGTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTCATATTCTGGTACAAGTG CCAGTTATAATAGTTGATCAGT TTT                    ]
[-] EMBL CB667516             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TAGGGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTTGGTGGTACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGGCACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAGGTTAGACTCACCGAAGAAGATGAGTTCTTAAT AATCGGCTGTGACGGGC  TTTGGGATGTGATGACCAGCCAGTGCGCTGTCA CAATGGTAAGGAAAGAGCTGATGACACACAACGATCCGGAAAGATGCTCG CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTAGTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTAATGTTCTGGTACAAGTG CCAGTTATAATAGTTGAT                            ]
[-] EMBL CB652834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGCGATTGGTGATTGGCACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAGGTTAGACTCACCGAAGAAGATGAGTTCTTAAT AATCGGCTGTGACGGGC  TTTGGGATGTGATGGCCAGCCAGTGCGCTGTCA CAATGGTAAGGAAAGAGCTGATGACACACAACGATCCGGAAAGATGCTCG CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTAGTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATATCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATGTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTA                                                                                    ]
[+] EMBL BM419357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGTTCTTAATAAATC GCTGTGACGGGCCTTTTGGGATGTGATGACCAGCCAGTGCGCTGTCA CAATGGTAAGGAAAGAGCTGATGACACACAATGATCCGGAAAGATGCTCG CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGAGTGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGGCTTCGACCTAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTCATATTCTGGTACAAGTG CCACTTATAATAGTTGATCAGT TTTGTTCTA    AAAA      ]
[+] EMBL BQ907111             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACGGGC  TTTGGGAT TGATGACCAGCCAGTGCCCTGTCACCAATGGTAAGGAAAGA CTGATGACACCCAGTGATCCGGAAAGATGCTCGCCAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACC ATACCAGCATTCATATTCTGGTACAAGTGCCCAGTTATAATAGTTGATCCNTCTTTGTTCTACTTCAAAAAAAAAA]
[+] EMBL BI802453             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             acCCAGTGC CTGTCA CAATGGTAAGGAAAGAGCTGATGACACAC ATGATCCGGAAAGATGCTCG CAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCAC ATGTAATTGACC ATACCAGCATTCATATTCTGGTACAAGTG CCAGTTATAATAGTTGATCAGT TTTGTTCTA    AAAAA     ]
[+] EMBL BI813738             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAAGAAGCATTTCGA TGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGTAATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTTCTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGG TTCGAAATAAGTTGTGTAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATCTGTACCGGCGCCAGCATTTGGTTGTTCAC ATGTAATTGACC ATACCAGCATTCATATTCTGGTACAAGTG CCAGTTATAATAGTTGATCAGT TTTGTTCTA    AAAAAA    ]


>consensus_10840#0 ACGAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCTCCTTCTC CTTCCCATCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCA GCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAA GAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCG GAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCG CCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGA GCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCT GCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCA TCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGT TTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCA TAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGA GGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCAT TGACAGCACTTATTTTTGGCAGGTAAATTCTAACGCCAGTATCTCAAATGTTTATTCCAG TGGTACAATGCACTATTGAGTCATTAATCGATGCTACTTTAATGCGAAAAGTTTCTCAAG TCTGTACTGAAATTTTCCATTCATGACATCATTTTGTAATCCAGTAGCCTCTGCTAGTTA GTATCCAAACCACTAGTGGCAGAGAAATGAGTATTAGCATTTAAAGTCAAGCTGACTCAA TTATGAGGTGTTTCTGCAACTTCAATTAGTTATTAGATACTATTTTAGCTGATTTGTGAA TGGAAATAATTTTTTATCCATCGGCTATTTCACATTTTTTTAGAGAACAAATCATATATT AACCCGGCTTTGCATTAAAGCCCAACATAACAAGGTTCGACATTTTTAGCTGATTTGTGA ATGGAAATAACTCCTTTCTCATTTTTCATCCATCGGCTAGTTCACTTTTTTTTAGAGAAC AGATCATATATTGACCCAGCTTTGCAAGAAAGCTAACATAACAAACAGACCATATATTGA CCTGGCTTTGCAAGAAAGCCAACATAACAAGGTTTAAAAAAAAGCGATATCGCCCACCGT GGGGCTTGAACCCACAACCACAAGGTTAAGAGCCTTGCGCTCTACCGACTGAGCTAGACG GGCTTTTGGCTGTTTCACATTTATTGCTTCATTGTCCAATATCACAACAAAGCGCAAAGT TCTTTCCTGCTCCTTAATAAGTTGGTTGTGTTGCCTTAGTTGCTTGACAATCTTTAGATC AATTATATCATTTTGCATATTATGGTGAATATACCTCATTTGAATGGCAGGACATTGCTC GTTGCAAATGCAGGAGACTGTCGAGCGGTATTAGGGAAGAGAGGCCGAGCTGTTGAGTTG TCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTTGGTGGT ACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGG CACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAG GTTAGACTCACCGAAGAAGATGAGTTCTTAATAATCGGCTGTGACGGGCTTTGGGATGTG ATGACCAGCCAGTGCGCTGTCACAATGGTAAGGAAAGAGCTGATGACACACAACGATCCG GAAAGATGCTCGCAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTA ACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTT CGAGTACGAAGAAGCATTTCGATGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGT AATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTT CTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGGTTCGAAATAAGTTGTG TAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATC TGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTCATATT CTGGTACAAGTGCCAGTTATAATAGTTGATCAGTTTTGTTCTAAAAAAAAAAA



consensusID : consensus_10840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence
                              [CTTCCCCTCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCAGCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAAGAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCGGAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCGCCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGAGCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCTGCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCATCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGTTTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCATAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGAGGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCATTGACAGCACTTATTTTTGGCAGGAGACTGTCGAGCGGTATTAAGGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATATACCCA]

[+] EMBL CB667515             [CTTCCCCTCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCAGCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAAGAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCGGAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCGCCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGAGCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCTGCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCATCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGTTTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCATAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGAGGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCATTGACAGCACTTATTTTTGGCAGGAGACTGTCGAGCGGTATTAAGGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATATACCCA]


>consensus_10840#1 CTTCCCCTCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCA GCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAA GAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCG GAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCG CCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGA GCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCT GCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCA TCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGT TTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCA TAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGA GGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCAT TGACAGCACTTATTTTTGGCAGGAGACTGTCGAGCGGTATTAAGGAAGAGAGGCCGAGCT GTTGAGTTGTCAAGAGACCATATACCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10840#0      ACGAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCTCCTTCTC 60
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CTTCCCATCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCA 120
consensus_10840#1      CTTCCCCTCGCCACCAGCTTCTCCGGCCGTCCGCCATCGCTGCTGACCGCAGCATCCGCA 60
                       ****** *****************************************************

consensus_10840#0      GCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAA 180
consensus_10840#1      GCCACAGCTTCTCCGACGCCGGCGACGGCCGTTTCCCCCCCGGAGAATACGAATACGGAA 120
                       ************************************************************

consensus_10840#0      GAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCG 240
consensus_10840#1      GAGTGTGAATCATGAGCGGAGGCGTCGAGCCGGAGACCCCGCCGGGTAGCAGCAGCGGCG 180
                       ************************************************************

consensus_10840#0      GAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCG 300
consensus_10840#1      GAAGCACGCCGGTGGGCGGCAAGCCGCCGCGCCACCACCTCACGTCCATCCGCCACTGCG 240
                       ************************************************************

consensus_10840#0      CCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGA 360
consensus_10840#1      CCAGCAGCGCTCGCATCGCCGCCGCAACCGCAGAATTCGACCTGGGTGCGGGGACGCTGA 300
                       ************************************************************

consensus_10840#0      GCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCT 420
consensus_10840#1      GCTTGATCTCGCCCACGGACATTCGCCCTGGCTTCCTGCCGGTGTTCCGTTCCGGGAGCT 360
                       ************************************************************

consensus_10840#0      GCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCA 480
consensus_10840#1      GCGCCGATATCGGTACCAAATCGTACATGGAGGACGAGCATGTGTGCGTCGATAACCTCA 420
                       ************************************************************

consensus_10840#0      TCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGT 540
consensus_10840#1      TCGAGCACCTGGGAGTGCGTACACCTGTGATCCCTGCACCGGGTGCCTTCTACGGGGTGT 480
                       ************************************************************

consensus_10840#0      TTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCA 600
consensus_10840#1      TTGATGGTCATGGTGGTACGGACGCTGCTTGTTTTGTTCGGAAGAACTTACTGAGGTTCA 540
                       ************************************************************

consensus_10840#0      TAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGA 660
consensus_10840#1      TAATTGAGGATGGTCACTTCCCCAGCAGCATAGAGAAGGCAATCAGGAGTGCATTTGTGA 600
                       ************************************************************

consensus_10840#0      GGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCAT 720
consensus_10840#1      GGGCTGATCATGCAATTGCGGATTCCCATTCTCTTGACCGCAATTCTGGGACTACAGCAT 660
                       ************************************************************

consensus_10840#0      TGACAGCACTTATTTTTGGCAGGTAAATTCTAACGCCAGTATCTCAAATGTTTATTCCAG 780
consensus_10840#1      TGACAGCACTTATTTTTGGCAGGAGACTGTCGAG--CGGTATTAAGGAAG--------AG 710
                       ***********************  * *    *   * ****     * *        **

consensus_10840#0      TGGTACAATGCACTATTGAGTCATTAATCGATGCTACTTTAATGCGAAAAGTTTCTCAAG 840
consensus_10840#1      AGGC----CGAGCTGTTGAGTTGTCAAGAGACCATATACCCA------------------ 748
                        **      *  ** ******  * **  **   **     *                  

consensus_10840#0      TCTGTACTGAAATTTTCCATTCATGACATCATTTTGTAATCCAGTAGCCTCTGCTAGTTA 900
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GTATCCAAACCACTAGTGGCAGAGAAATGAGTATTAGCATTTAAAGTCAAGCTGACTCAA 960
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TTATGAGGTGTTTCTGCAACTTCAATTAGTTATTAGATACTATTTTAGCTGATTTGTGAA 1020
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TGGAAATAATTTTTTATCCATCGGCTATTTCACATTTTTTTAGAGAACAAATCATATATT 1080
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      AACCCGGCTTTGCATTAAAGCCCAACATAACAAGGTTCGACATTTTTAGCTGATTTGTGA 1140
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      ATGGAAATAACTCCTTTCTCATTTTTCATCCATCGGCTAGTTCACTTTTTTTTAGAGAAC 1200
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      AGATCATATATTGACCCAGCTTTGCAAGAAAGCTAACATAACAAACAGACCATATATTGA 1260
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CCTGGCTTTGCAAGAAAGCCAACATAACAAGGTTTAAAAAAAAGCGATATCGCCCACCGT 1320
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GGGGCTTGAACCCACAACCACAAGGTTAAGAGCCTTGCGCTCTACCGACTGAGCTAGACG 1380
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GGCTTTTGGCTGTTTCACATTTATTGCTTCATTGTCCAATATCACAACAAAGCGCAAAGT 1440
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TCTTTCCTGCTCCTTAATAAGTTGGTTGTGTTGCCTTAGTTGCTTGACAATCTTTAGATC 1500
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      AATTATATCATTTTGCATATTATGGTGAATATACCTCATTTGAATGGCAGGACATTGCTC 1560
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GTTGCAAATGCAGGAGACTGTCGAGCGGTATTAGGGAAGAGAGGCCGAGCTGTTGAGTTG 1620
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTTGGTGGT 1680
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      ACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGG 1740
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CACGTGAAAGGTTCCAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAG 1800
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GTTAGACTCACCGAAGAAGATGAGTTCTTAATAATCGGCTGTGACGGGCTTTGGGATGTG 1860
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      ATGACCAGCCAGTGCGCTGTCACAATGGTAAGGAAAGAGCTGATGACACACAACGATCCG 1920
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      GAAAGATGCTCGCAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTA 1980
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      ACTGTATTGGTTGTGTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTT 2040
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CGAGTACGAAGAAGCATTTCGATGGAAGGATTGCATATGTTAAAGGGAGCTCTTGACAGT 2100
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      AATGCCTGAGTTCTCAAAACCTGCCTTCTCTGGTAACTTTGGTTGTATGATCTTGTTTTT 2160
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CTGTTGGGTCCTTGAAAGTTTTGCTCTGTTCTTTCAGCTATAGGTTCGAAATAAGTTGTG 2220
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TAGAATTACTGAAATTTTGTTGAGGTGTAGGCTAATCATTTTGTGAGGCGATGATTTATC 2280
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      TGTACCGGCGCCAGCATTTGGTTGTTCACAATGTAATTGACCAATACCAGCATTCATATT 2340
consensus_10840#1      ------------------------------------------------------------
                                                                                   

consensus_10840#0      CTGGTACAAGTGCCAGTTATAATAGTTGATCAGTTTTGTTCTAAAAAAAAAAA 2393
consensus_10840#1      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)