cluster # 10847

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10847 cluster # 10847 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10847#0 length = 713 sequences # 5

consensus_10847#1 length = 507 sequences # 3

consensusID : consensus_10847#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 713
fasta sequence

                              [GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCCACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTCAGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA-AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT-ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG-GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT-GCAATAATTCTGCA-GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA-AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC-ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT]

[+] EMBL AK058263             [GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCCACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTCAGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCGGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGT  ]
[+] EMBL CA764967             [                                                                                                                                        AAAGCATCGTATCGCGATCGCGCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAGTTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAGATGTAAATGCAGCAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT]
[+] EMBL BI802497             [                                                                                                                                                                                                                                                                                                      GTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCATAGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCATAGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCTATATATATATATGTAACACGGATCATAGATACCC AATAGATGATGATTATGATTAaaaa        ]
[+] EMBL BI811993             [                                                                                                                                                                                                                                                                                                                                         GTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGATCACCTTGATGAACATCAAGGATGGC CCTACGCCTCCCTCGTCCCCCTTCATTCA CAGCTTCTTCATA CCCCCGTTTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGCCACACACCCTCCCAATAATTCTCCACGGTGCTAGTCTTTGTTCCTCTTTTGATGCCATACATAACTGCTTATAGCC  AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGC AC AGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAAC CGGATCATAGATACCCAAtaaa                            ]
[-] EMBL CB663357             [                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACTCT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAG                                        ]




>consensus_10847#0
GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCC
ACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTC
AGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCA
AGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTC
AAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGT
CTACAATACAAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAGG
GAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTC
ATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATA
TATTAACAGAACTGGCACACACACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTCT
TTTGATGGCATACATAACTGCTTATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGAC
CAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTA
ACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT

consensusID : consensus_10847#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 507
fasta sequence

                              [AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCANAGACGCGCTGGACAGAGTGAT-GTCAACCGGACAACCGTGATCGTTGCTCA-CCGTTTGTCTACAATA-CAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGT-GATCATCGAGAAGGGAAAGCA-CGATACCTTGATGAACAT-CAAGGATGGCGCCTACGCCTCCCTCGTCGCCC-TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT-GCAATAATTCTGCAGGTGCTAGTC--T-TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA-AGAGGGAAAGGCTATACAGATAGTAAGGA-CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA]

[+] EMBL BM420368             [AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCANAGACGCGCTGGACAGAGTGAT GTCAACCGGACAACCGTGATCGTTGCTCA CCGTTTGTCTACAATA CAAATGCGGATTTGATC CAGTCGTCAAGAATGGAGT GATCATCGAGAAGGGAAAGCA CGATACCTTGATGAACATCCAAGGATGGCGCCTACGCCTCCCTCGTCGCCC TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACAC CTCGCAATAATTCTGCAGGTGCTAGTCCNN TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGA CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAA CCGGATCATAGATCACCCAATAGATGATGATTATGATTAAAAAAA   ]
[+] EMBL BQ908299             [         CGCTGGATGCTGAATCCGAAAGGGTGGTTCA AGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCCGTTTGTCTACAATACCAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGT GATCATCGAGAAGGGAAAGCA CGATACCTTGATGAACAT CAAGGATGGCGCCTACGCCTCCCTCGTCGCCC TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCAGGTGCTAGTC  TCTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCC AGAGGGAAAGGCTATACAGATAGTAAGGA CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAA    ]
[+] EMBL BI813460             [                                                                                                                             cccaAGTCGTCAAGAATGGAGTGGATCATCGAGAAGGGAAAGCACCGATACCTTGATGAACAT CAAGGATGGCGCCTACGCCTCCCTCGTCGCCCATTCATTCAGCAGCTTCTTCATA CCCCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACCGAACTGGCACACACACT GCAATAATTCTGCAGGTGCTAGTC  T TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCACAGAGGGAAAGGCTATACAGATAGTAAGGACCCAATGTAAATGCAACCAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA]




>consensus_10847#1
AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCANAGACGCGCTGGACAGAGTG
ATGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAATGCGGATTT
GATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAGGGAAAGCACGATACCTTGATGAA
CATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCC
GCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACAC
ACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCT
TATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGACCAATGTAAATGCAACAAGTTGG
TCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAAT
AGATGATGATTATGATTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10847#0      GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCC 60
consensus_10847#1      ------------------------------------------------------------
                                                                                   

consensus_10847#0      ACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTC 120
consensus_10847#1      ------------------------------------------------------------
                                                                                   

consensus_10847#0      AGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCA 180
consensus_10847#1      ------------------------------------------------------------
                                                                                   

consensus_10847#0      AGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTC 240
consensus_10847#1      ---------------------AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTC 39
                                             * ************************************

consensus_10847#0      AA-GACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTG 299
consensus_10847#1      ANAGACGCGCTGGACAGAGTGATG-TCAACCGGACAACCGTGATCGTTGCTCACCGTTTG 98
                       *  ********************* ***********************************

consensus_10847#0      TCTACAATACAAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAG 359
consensus_10847#1      TCTACAATACAAA-TGCGGATTTGATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAG 157
                       ************* **********************************************

consensus_10847#0      GGAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTT 419
consensus_10847#1      GGAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTT 217
                       ************************************************************

consensus_10847#0      CATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACAT 479
consensus_10847#1      CATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACAT 277
                       ************************************************************

consensus_10847#0      ATATTAACAGAACTGGCACACACACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTC 539
consensus_10847#1      ATATTAACAGAACTGGCACACACACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTC 337
                       ************************************************************

consensus_10847#0      TTTTGATGGCATACATAACTGCTTATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGA 599
consensus_10847#1      TTTTGATGGCATACATAACTGCTTATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGA 397
                       ************************************************************

consensus_10847#0      CCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGT 659
consensus_10847#1      CCAA-TGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGT 456
                       **** *******************************************************

consensus_10847#0      AACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT 713
consensus_10847#1      AACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA--- 507
                       *** **************** *********************      *