These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2382 fasta sequence [AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTTCCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT-AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCATGCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACCGTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTATAATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCCCAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCTAGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACATCTAGCTCGGGTATCCTATCTATTAATG] [+] EMBL AK102977 [AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTTCCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTT CAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGGCAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCATGCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACCGTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTATAATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCCCAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCTAGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACATCTAGCTCGGGTATCCTATCTATTAATG] [+] EMBL AK101898 [ GAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTTTTCTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATC CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAAC ] [+] EMBL AK064015 [ GGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAAC ] [+] EMBL CB096881 [ ATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTAATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAAC AACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTTTGTTGTGATGGATGATTCATTGATTCCTGCCAATTCCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAAaaaaaaa ] [-] EMBL BI306050 [ ttCTGATGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAAC AACGAGCCGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCACCAA ] consensusID : consensus_10858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence [CTCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGAGGCGAGGCGAGGCGAGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCGAGATTGAGCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGAGGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTCGAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGCAATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGTACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCCTCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATATTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTCTTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTCTTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTCCTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA] [+] EMBL CA758589 [CTCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGAGGCGAGGCGAGGCGAGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCGAGATTGAGCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGAGGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTCGAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGCAATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGTACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCCTCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATATTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTCTTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTCTTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTCCTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA] consensusID : consensus_10858#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTTTGATTGTGCCATTTTTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTTCAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCCCCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCCCCAAGGCAATTGTAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACAGTTTCGGTGAAAAAAAAAAAACTTAAAAGGA] [-] EMBL CB668896 [TATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTTTGATTGTGCCATTTTTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTTCAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCCCCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCCCCAAGGCAATTGTAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACAGTTTCGGTGAAAAAAAAAAAACTTAAAAGGA] consensusID : consensus_10858#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [GAAGTGTTGGGTGGACTTGCAGTATACGATGGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTGACCTGGGTGTTGAGCTATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCTTGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATCCGTTATTGTAGCTTGCGAAGCCGTGTTTTGGTGTTATTCACATGCTCACGATGAGAACCCATAGCGATGTCGGGTTAATTTACATGATTGGAGCTGTATCATAGGAGGGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGAAACCAAACGTGGAACGACTTCATTTGTGCAATGCAAATTTCCAGAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTTAATGGCTATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA] [+] EMBL BI805405 [GAAGTGTTGGGTGGACTTGCAGTATACGATGGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTGACCTGGGTGTTGAGCTATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCTTGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATCCGTTATTGTAGCTTGCGAAGCCGTGTTTTGGTGTTATTCACATGCTCACGATGAGAACCCATAGCGATGTCGGGTTAATTTACATGATTGGAGCTGTATCATAGGAGGGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGAAACCAAACGTGGAACGACTTCATTTGTGCAATGCAAATTTCCAGAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTTAATGGCTATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAA 60 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCA 120 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 CTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGA 180 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTT 240 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 CCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCC 300 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCC 360 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 TGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGAT 420 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 CTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAG 480 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 TGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATG 540 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTG 600 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAG 660 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 TTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCC 720 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATA 780 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAG 840 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAG 900 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAAT 960 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGA 1020 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGT 1080 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 ACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGAT 1140 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGT 1200 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 ATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAA 1260 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------TATGATATGCCAAATCACTTAGACTGGAGG 30 consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGG 1320 consensus_10858#1 -----------------------------------------------------------C 1 consensus_10858#2 GTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTC 90 consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTC 1380 consensus_10858#1 TCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGA 61 consensus_10858#2 AGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTC--ATATACAA- 147 consensus_10858#3 ------------------------------GAAGTGTTGGGTGGACTTGCAGTATACGAT 30 consensus_10858#0 AGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTC--ATATACAA- 1437 consensus_10858#1 GGCGAGGCGAGGCGAGGCG--AGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGA- 118 * * ** * * * * consensus_10858#2 GGGCCGCAATAC--AACACTCAGT-TTGGT--CGTTCCAT--TCGAATA-ACCCTTTT-- 197 consensus_10858#3 GGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTG 90 consensus_10858#0 GGGCCGCAATAC--AACACTCAGT-TTGGT--CGTTCCAT--TCGAATA-ACCCTTTT-- 1487 consensus_10858#1 AACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATC 178 ** * * * ** * * ** * *** consensus_10858#2 ACT--GGTGTT----GAGC---ATCTTTTTGA-TTGTGCCAT-TTTTCGTGTACTCAGCT 246 consensus_10858#3 ACCTGGGTGTT----GAGCT--ATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCT 144 consensus_10858#0 ACT--GGTGTT----GAGC---ATCTTTCTGA-TTGTGCCAT-TTCTCGTGTACTCAGCT 1536 consensus_10858#1 CGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCG-AGAT 237 * *** * ** *** * * * * * * ** ** * ** * consensus_10858#2 TGA-CAATGC-TCATAT-TGGTGGCT--GCTGGTGAAGGAAA--AAGTATC----CGTTA 295 consensus_10858#3 TGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATC----CGTTA 200 consensus_10858#0 TGA-CAATGC-TCATAT-TGGTGGCT--GCTGGTGAAGGAAA--AAGTATC----CGTTA 1585 consensus_10858#1 TGA--GCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGA 295 ** * * * *** * * * ** ** * ** * consensus_10858#2 TTGTA-CT--TGC-AAAC-CGTGGTT-GGT-----GTTATTCACATGCTCA-GATGAAA- 342 consensus_10858#3 TTGTAGCT--TGCGAAGC-CGTGTTTTGGT-----GTTATTCACATGCTCACGATGAGAA 252 consensus_10858#0 TTGTA-CT--TGC-AAAC-CGTGGTT-GGT-----GTTATTCACATGCTCA-GATGAAA- 1632 consensus_10858#1 GGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGC 355 * ** ** * * ** ** * * *** ** ** * * * consensus_10858#2 --CA-AACGAG--CGGGTAATTTCAGATG-------------GAGCTGTA-CATA-GGAG 382 consensus_10858#3 CCCATAGCGATGTCGGGTTAATTTACATGATTG---------GAGCTGTATCATA-GGAG 302 consensus_10858#0 --CA-AACGAG--CGGGTAATTACAGATG-------------GAGCTGTA-CATA-GGAG 1672 consensus_10858#1 GCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTC 415 ** ** **** * * * ** *** ** consensus_10858#2 GGGA---AAAAGAAACAAAAC----GGGAAC-GACTTCATTTGTGGAGAG--GAAAAAGA 432 consensus_10858#3 GGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGA 362 consensus_10858#0 GGGA---AAAAGAAACAAAAC----GGGAAC-GACTTCATTTGTGGAGAG--GAAAAAGA 1722 consensus_10858#1 GAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGC 475 * * * ** * * * * ** *** * *** * consensus_10858#2 AA----------CAAAACG-GGAACGACTTCATTTGTGCAATGCAAAA-TTTCCAAGATC 480 consensus_10858#3 AA----------CCAAACGTGGAACGACTTCATTTGTGCAATGCAAAT-TTCCAGAGATC 411 consensus_10858#0 AA----------CAAAACG-GGAACGACTTCATTTGTGCAATGCAAAA-TTTCCAAGATC 1770 consensus_10858#1 AATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGT 535 ** * * * * * * * *** * ** * * * consensus_10858#2 AGAAAACGTGTTGTCCCCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-T-AATGGC 537 consensus_10858#3 AGAAAACGTGTTGTCACCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-TTAATGGC 469 consensus_10858#0 AGAAAACGTGTTGTCACCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-T-AATGGC 1827 consensus_10858#1 ACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCC 595 * * * * ** ** ** * *** * * * * ** ** * ** * consensus_10858#2 TATTTGGAGTCTG-TTGTGATGG-ATGATTCAT-TGATTCCTGCCAATTTTTCCTTGCTG 594 consensus_10858#3 TATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTG 529 consensus_10858#0 TATTTGGAGTCTG-TTGTGATGG-ATGATTCAT-TGATTCCTGCCAATTTCTCCTTGCTG 1884 consensus_10858#1 TCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATA 655 * * * * * * * * ** ** ** ** * ** * consensus_10858#2 CTGTACCCTCCCCAAGGCAATTGTAAAAAAAAA--ATGTAGAGCTGTTGGGAAA------ 646 consensus_10858#3 CTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAA------ 583 consensus_10858#0 CTGTACCCTCACCAAGGCAATTGTAAAAAAAAA--ATGTAGAGCTGTTGGGAAA------ 1936 consensus_10858#1 TTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTC 715 ** * ** ** * *** ** ** * * * ** consensus_10858#2 -TGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACA-GTTTCGG 704 consensus_10858#3 -TGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA--------------------- 621 consensus_10858#0 -TGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACA-GTTTCGG 1994 consensus_10858#1 TTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTC 775 * * ** * ** *** ** * * consensus_10858#2 TGAAAAAAAAAAAACTTAAAAGGA------------------------------------ 728 consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 TGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCAT 2054 consensus_10858#1 TTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTC 835 consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACC 2114 consensus_10858#1 CTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA--------- 886 consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 GTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTAT 2174 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCC 2234 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 CAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCT 2294 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ------------------------------------------------------------ consensus_10858#3 ------------------------------------------------------------ consensus_10858#0 AGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACA 2354 consensus_10858#1 ------------------------------------------------------------ consensus_10858#2 ---------------------------- consensus_10858#3 ---------------------------- consensus_10858#0 TCTAGCTCGGGTATCCTATCTATTAATG 2382 consensus_10858#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||