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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 968 fasta sequence
[TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAA--------ATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT-TGTTCAGCTTTATGCCTGGCTTCAC-GCAG-AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC-AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC-GTCTTGGTGAT-GGA-GGGCTTCTACGCCTCCTAGGAGTTGGGGACT-GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCGACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTG]
[-] EMBL BI812545 [TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAA ATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTGGAATTCTTTCCAA TCTAAAAATCG TCTAGCTCTTTCTGCTG TGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCTGTG TCAGCTTTATGCCTGGCTTCACGGCAGAAGCCGTTTC ]
[+] EMBL CB626893 [ tGTGATAGATACATTATAATAAAATATAACACATCCACCAAAAATCCATTATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGTTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAGACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTC CTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGAC ]
[-] EMBL AU029423 [ ttTTTCTACGCATCG GTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGGTCTTGGTGATGGGAGGGGCTT TANGCCTCCTANGAGTTGGGGACTGGGCTTCT TCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGAT GG TCCGA ]
[-] EMBL AU032010 [ TTTT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCG ]
[-] EMBL AK109197 [ ATCAACCTCATAAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCGCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTG]
[-] EMBL OSR31321A [ CGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGNCCTCAACATTTTTTCTTATAGATTCTTCAAACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCG ]
consensusID : consensus_10859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[ATCCCAAAAACTCACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAGCATGCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACCGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGACGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTTACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACCAAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCGTGCCACT]
[+] EMBL AK064164 [ATCCCAAAAACTCACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAGCATGCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACCGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGACGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTTACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACCAAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCGTGCCACT]
consensusID : consensus_10859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[AAANCTTAAACCTCNAGGAGCTCCTCTTAAGTACTTCAGGTNAGCTTCCTTTTGGCGCTTTTCTTATCNCCTTCTTCTTTTTNCTCTNAATTAAATTGTTTGCTCTGATACATGACTTGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTTCTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACCCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC]
[-] EMBL C74081 [AAANCTTAAACCTCNAGGAGCTCCTCTTAAGTACTTCAGGTNAGCTTCCTTTTGGCGCTTTTCTTATCNCCTTCTTCTTTTTNCTCTNAATTAAATTGTTTGCTCTGATACATGACTTGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTTCTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACCCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10859#0 TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAAATATC 60
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 TTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCA 120
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 AATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCT 180
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 ATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAAT 240
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 CGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTT 300
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 CGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCTTGTTCAGCT 360
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 TTATGCCTGGCTTCACGCAGAGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCA 420
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 TCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCG 480
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 GAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTCAACTCTTCGAGCGAGCTCC 540
consensus_10859#2 ---------------------------------AAANCTTAAACC--TCNAG-GAGCTCC 24
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 TCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTT 600
consensus_10859#2 TCTT-AAGTA-CTTCAGGTNAGCTTCCTTTTGGCGC-TTTTCTTATCNCCTTCTTCTTTT 81
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 TGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACA 660
consensus_10859#2 TNCT-CTNAATTAAATTGTTT-GCTCTGATACATGACTTGG-CTGCAGGAGTTATTTACA 138
consensus_10859#1 ------------------------------------------------------------
consensus_10859#0 GTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTT 720
consensus_10859#2 GTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTT 198
consensus_10859#1 -----ATCCCAAAAACTC--ACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAG-CAT 52
* * ** ** * ** * * * * * ** * * *
consensus_10859#0 CTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGT 780
consensus_10859#2 CTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGT 258
consensus_10859#1 GCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACC---GT 109
* * * * *** ** * * * ** ** * *** **
consensus_10859#0 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCGACCGCGGG 840
consensus_10859#2 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGG 318
consensus_10859#1 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGG 169
************************************************** ********
consensus_10859#0 GAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCG 900
consensus_10859#2 GAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACC- 377
consensus_10859#1 GAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCG 229
***************** ************************************** **
consensus_10859#0 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCG 960
consensus_10859#2 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC-------- 429
consensus_10859#1 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCG 289
************************************** ** * **
consensus_10859#0 TGCTAGTG---------------------------------------------------- 968
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 TGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGA 349
consensus_10859#0 ------------------------------------------------------------
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 CGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTT 409
consensus_10859#0 ------------------------------------------------------------
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 ACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACC 469
consensus_10859#0 ------------------------------------------------------------
consensus_10859#2 ------------------------------------------------------------
consensus_10859#1 AAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCG 529
consensus_10859#0 -------
consensus_10859#2 -------
consensus_10859#1 TGCCACT 536
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||