These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1122 fasta sequence [CGTGCGGTGCTACGAGGTGGGCATCAACAAGACGGCCACCGTCGAGACCATCGCCAACCTCCTCCAGGAGGTAGGGTGTAACCATGCACAAAGTGTTGGGTTCTCCACTGATGGTTTTGCCACAACTACCACAATGAGAAAACTTGGTCTAATTTGGGTGACCAACCGAATGCACATTGAGATCTACAAGTACCCAGCATGGGGTGATGTTGTGGAGATTGAAACTTGGTGCCAAGAAGATGGAAAGATCGGTACTCGTCGTGATTGGATCCTTAAGGATCTGGCTAATGGTGAAGTTATCGGCAGAGCTACCAGCAAGTGGGTCATGATGAACCAAAATACACGCAGACTTCAAAGAGTGAGTGATGACGTGAGGGATGAGGTTTTTGTACACTGTCCAAAGACTCCAAGATTAGCATTCCCCGAGGAAAATAATGGCAGTTTGAAAAAGATTCCAGTTCTTACTGATCCTGCACAGCACTCAAGACTAGGCCTAGTGCCAAGAAGAGCTGATCTGGACATGAACCAACATGTCAATAATGTCACTTACATTGGTTGGGTACTTGAAAGTATACCTCAAGATA-TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA-GAAGAGAGTG-CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG-GA-GAAGAGT-TCCA-ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG-ACA-GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG-AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT-GTATTCTGATCCTTCCATT-TGTTCCATCATTTTGCTCTTGG-TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA-TTTTGTGTTAATTTGTTACCTTTGT-AATGTA-CCGTGGTAACAATTACA-GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT-GTATACTTTGTACTAGTAGAAT-CAGTGTTTATGAAT-CTT-CAAATAATTCTATCGGCAACAGATA-G-CAATGGCATGCCAAGTTTGGTTCTTCCTGTAAAAAAA] [+] EMBL AK061352 [CGTGCGGTGCTACGAGGTGGGCATCAACAAGACGGCCACCGTCGAGACCATCGCCAACCTCCTCCAGGAGGTAGGGTGTAACCATGCACAAAGTGTTGGGTTCTCCACTGATGGTTTTGCCACAACTACCACAATGAGAAAACTTGGTCTAATTTGGGTGACCAACCGAATGCACATTGAGATCTACAAGTACCCAGCATGGGGTGATGTTGTGGAGATTGAAACTTGGTGCCAAGAAGATGGAAAGATCGGTACTCGTCGTGATTGGATCCTTAAGGATCTGGCTAATGGTGAAGTTATCGGCAGAGCTACCAGCAAGTGGGTCATGATGAACCAAAATACACGCAGACTTCAAAGAGTGAGTGATGACGTGAGGGATGAGGTTTTTGTACACTGTCCAAAGACTCCAAGATTAGCATTCCCCGAGGAAAATAATGGCAGTTTGAAAAAGATTCCAGTTCTTACTGATCCTGCACAGCACTCAAGACTAGGCCTAGTGCCAAGAAGAGCTGATCTGGACATGAACCAACATGTCAATAATGTCACTTACATTGGTTGGGTACTTGAAAGTATACCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGCAACAGATA G CAATGGCATGCCAAGTTTGG ] [+] EMBL BI810932 [ CACTTACCTTGGTTGGGTACTTGAAAGTATACCTCAAGATAGTTATTGATACACATGAGTTAC AACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCC ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACACGTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACCATTACC GTTTGTGACATTCGTCTTAaaaaaaaaa ] [+] EMBL AU031197 [ cGGTACTTGAAAGTATNCCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACAGGAAGAGANTGCCCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTaaaaaaa ] [+] EMBL AU031196 [ AGTATACCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAATTTTTGTGTTAA TTGTTACCTTGGT AATG A CCGTGGT ACAA TNCA GTTaa ] [+] EMBL BM037769 [ c CCAACATGAGGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCACATGGATCCGCATTTGCTGCACCGCACCCCGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCCTT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGNGTTAATTTGNTACCTTTGTGAATGTACCCGTGGTAACAATTACACGTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGNGTTTANGAAT CTT CAAATAATTNTATCGNCAACAGATA GCCAATGGCATCCC ] [+] EMBL BI805834 [ AAGGAGAGTGATGAAGAGTGTCCC ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCGTACA GTTCTTGCTCTGCTTAAGATTTGCTGGGAACGGGTAACGAGATCAACCGTGGGCGCCCCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTGTTGATCATACAGTCATATGGTATTCTGATCCTTCCCTTGTGTNCCATCATTTTGCTCTTGGTTGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTNAATTTGTGACCTTTGT AATGTA CCGTGGTAAC ATTACA GTTTGTGACATTCGTCTTACCTGAAGNTGTGCGTTGCTGGTATACTTTGTACTAGTAGAATGCAGTGTTTATGAATGCTTGCAAt ] [+] EMBL AU029269 [ GGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGCAACAGATANG CAATGGCATGCCAAGTTTGG ] [+] EMBL BM038103 [ ccgATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAAC ATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGC ACAGATA G C ATGGCATGCC AGTTTGGTTCTTCCTGTAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||