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Oryza sativa
cluster # 10863 cluster # 10863       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10863#0 length = 1122 sequences # 8  

consensusID : consensus_10863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1122
fasta sequence
                              [CGTGCGGTGCTACGAGGTGGGCATCAACAAGACGGCCACCGTCGAGACCATCGCCAACCTCCTCCAGGAGGTAGGGTGTAACCATGCACAAAGTGTTGGGTTCTCCACTGATGGTTTTGCCACAACTACCACAATGAGAAAACTTGGTCTAATTTGGGTGACCAACCGAATGCACATTGAGATCTACAAGTACCCAGCATGGGGTGATGTTGTGGAGATTGAAACTTGGTGCCAAGAAGATGGAAAGATCGGTACTCGTCGTGATTGGATCCTTAAGGATCTGGCTAATGGTGAAGTTATCGGCAGAGCTACCAGCAAGTGGGTCATGATGAACCAAAATACACGCAGACTTCAAAGAGTGAGTGATGACGTGAGGGATGAGGTTTTTGTACACTGTCCAAAGACTCCAAGATTAGCATTCCCCGAGGAAAATAATGGCAGTTTGAAAAAGATTCCAGTTCTTACTGATCCTGCACAGCACTCAAGACTAGGCCTAGTGCCAAGAAGAGCTGATCTGGACATGAACCAACATGTCAATAATGTCACTTACATTGGTTGGGTACTTGAAAGTATACCTCAAGATA-TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA-GAAGAGAGTG-CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG-GA-GAAGAGT-TCCA-ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG-ACA-GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG-AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT-GTATTCTGATCCTTCCATT-TGTTCCATCATTTTGCTCTTGG-TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA-TTTTGTGTTAATTTGTTACCTTTGT-AATGTA-CCGTGGTAACAATTACA-GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT-GTATACTTTGTACTAGTAGAAT-CAGTGTTTATGAAT-CTT-CAAATAATTCTATCGGCAACAGATA-G-CAATGGCATGCCAAGTTTGGTTCTTCCTGTAAAAAAA]

[+] EMBL AK061352             [CGTGCGGTGCTACGAGGTGGGCATCAACAAGACGGCCACCGTCGAGACCATCGCCAACCTCCTCCAGGAGGTAGGGTGTAACCATGCACAAAGTGTTGGGTTCTCCACTGATGGTTTTGCCACAACTACCACAATGAGAAAACTTGGTCTAATTTGGGTGACCAACCGAATGCACATTGAGATCTACAAGTACCCAGCATGGGGTGATGTTGTGGAGATTGAAACTTGGTGCCAAGAAGATGGAAAGATCGGTACTCGTCGTGATTGGATCCTTAAGGATCTGGCTAATGGTGAAGTTATCGGCAGAGCTACCAGCAAGTGGGTCATGATGAACCAAAATACACGCAGACTTCAAAGAGTGAGTGATGACGTGAGGGATGAGGTTTTTGTACACTGTCCAAAGACTCCAAGATTAGCATTCCCCGAGGAAAATAATGGCAGTTTGAAAAAGATTCCAGTTCTTACTGATCCTGCACAGCACTCAAGACTAGGCCTAGTGCCAAGAAGAGCTGATCTGGACATGAACCAACATGTCAATAATGTCACTTACATTGGTTGGGTACTTGAAAGTATACCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGCAACAGATA G CAATGGCATGCCAAGTTTGG                 ]
[+] EMBL BI810932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CACTTACCTTGGTTGGGTACTTGAAAGTATACCTCAAGATAGTTATTGATACACATGAGTTAC AACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCC ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACACGTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACCATTACC GTTTGTGACATTCGTCTTAaaaaaaaaa                                                                                                                      ]
[+] EMBL AU031197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cGGTACTTGAAAGTATNCCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACAGGAAGAGANTGCCCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTaaaaaaa                                                                                                                                       ]
[+] EMBL AU031196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTATACCTCAAGATA TTATTGATACACATGAGTTACAAACAATCACTCTTGACTACA GAAGAGAGTG CCAACATGATGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCA ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAATTTTTGTGTTAA TTGTTACCTTGGT AATG A CCGTGGT ACAA TNCA GTTaa                                                                                                                                             ]
[+] EMBL BM037769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             c CCAACATGAGGACATAGTAGATTCACTTACTTATATCGAGGAAGGAGAG GA GAAGAGT TCCACATGGATCCGCATTTGCTGCACCGCACCCCGAAGAGCAGCG ACA GTTCTTGCACTGCTTAAGATTTGCTGGGAACGGG AACGAGATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCCTT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGNGTTAATTTGNTACCTTTGTGAATGTACCCGTGGTAACAATTACACGTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGNGTTTANGAAT CTT CAAATAATTNTATCGNCAACAGATA GCCAATGGCATCCC                         ]
[+] EMBL BI805834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAGGAGAGTGATGAAGAGTGTCCC ATGGATCCGCATTTGCTGCACCGCACCCAGAAGAGCAGCGTACA GTTCTTGCTCTGCTTAAGATTTGCTGGGAACGGGTAACGAGATCAACCGTGGGCGCCCCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTGTTGATCATACAGTCATATGGTATTCTGATCCTTCCCTTGTGTNCCATCATTTTGCTCTTGGTTGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTNAATTTGTGACCTTTGT AATGTA CCGTGGTAAC ATTACA GTTTGTGACATTCGTCTTACCTGAAGNTGTGCGTTGCTGGTATACTTTGTACTAGTAGAATGCAGTGTTTATGAATGCTTGCAAt                                                             ]
[+] EMBL AU029269             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATCATACAGTCATAT GTATTCTGATCCTTCCATT TGTTCCATCATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCAAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAACAATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGCAACAGATANG CAATGGCATGCCAAGTTTGG                 ]
[+] EMBL BM038103             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ccgATTTTGCTCTTGG TGTCTGGCATAGCCCTTTCAGAGAATCGGTTGTACCCCCAA TTTTGTGTTAATTTGTTACCTTTGT AATGTA CCGTGGTAAC ATTACA GTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAAT CAGTGTTTATGAAT CTT CAAATAATTCTATCGGC ACAGATA G C ATGGCATGCC AGTTTGGTTCTTCCTGTAAAAAAA]


>consensus_10863#0 CGTGCGGTGCTACGAGGTGGGCATCAACAAGACGGCCACCGTCGAGACCATCGCCAACCT CCTCCAGGAGGTAGGGTGTAACCATGCACAAAGTGTTGGGTTCTCCACTGATGGTTTTGC CACAACTACCACAATGAGAAAACTTGGTCTAATTTGGGTGACCAACCGAATGCACATTGA GATCTACAAGTACCCAGCATGGGGTGATGTTGTGGAGATTGAAACTTGGTGCCAAGAAGA TGGAAAGATCGGTACTCGTCGTGATTGGATCCTTAAGGATCTGGCTAATGGTGAAGTTAT CGGCAGAGCTACCAGCAAGTGGGTCATGATGAACCAAAATACACGCAGACTTCAAAGAGT GAGTGATGACGTGAGGGATGAGGTTTTTGTACACTGTCCAAAGACTCCAAGATTAGCATT CCCCGAGGAAAATAATGGCAGTTTGAAAAAGATTCCAGTTCTTACTGATCCTGCACAGCA CTCAAGACTAGGCCTAGTGCCAAGAAGAGCTGATCTGGACATGAACCAACATGTCAATAA TGTCACTTACATTGGTTGGGTACTTGAAAGTATACCTCAAGATATTATTGATACACATGA GTTACAAACAATCACTCTTGACTACAGAAGAGAGTGCCAACATGATGACATAGTAGATTC ACTTACTTATATCGAGGAAGGAGAGGAGAAGAGTTCCAATGGATCCGCATTTGCTGCACC GCACCCAGAAGAGCAGCGACAGTTCTTGCACTGCTTAAGATTTGCTGGGAACGGGAACGA GATCAACCGTGGGCGCACCGTGTGGAGGAAGCTAGCTAGATGAATTCCCTAGTTTTGATC ATACAGTCATATGTATTCTGATCCTTCCATTTGTTCCATCATTTTGCTCTTGGTGTCTGG CATAGCCCTTTCAGAGAATCGGTTGTACCCCAAATTTTGTGTTAATTTGTTACCTTTGTA ATGTACCGTGGTAACAATTACAGTTTGTGACATTCGTCTTACCTGAAGTTGTGCGTTGCT GTATACTTTGTACTAGTAGAATCAGTGTTTATGAATCTTCAAATAATTCTATCGGCAACA GATAGCAATGGCATGCCAAGTTTGGTTCTTCCTGTAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)