Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1087 cluster # 1087       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1087#0 length = 907 sequences # 2  

consensusID : consensus_1087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 907
fasta sequence
                              [CATCTCCATTTTCCTCTTCCTCGTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCATCATCGAGCTTGATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCACCTTCCCTTGAGAAGATTTGTTACTAGTTTAATATTTCCAAGAAAGAGAAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGGGCGTGCTAGTCAAGAAGAGAAGAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTCCCCAAATCCACTCCTTCCTTCCTTCCTTCCTTCCTCCCTTGGTTCATTCATTGATTTGATTTTTGCACGGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTCATCTTCCTCTCCGCTACTATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCTCCACGACGATGCCGATGCCGACGCCTCCGAATCCCCCAGGGAAAGGGCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCGACAAAATGCGAATCTGAGAAGGTCCAGTGATGGAGTTCTGATATTTATATCATACTTAGTTGATTTGGGAACAGATGTAACCCCTATTGTGGATAAATTCTGTTGTTGAAGTGTAGTACGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGGGGGCAATGCTGGGAGTGTAGACTTATTAAAACATGAGATTTGGGCTGAAAAAA]

[+] EMBL CF294013             [CATCTCCATTTTCCTCTTCCTCGTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCTCTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCATCATCGAGCTTGATCTCGTGCTTGTATCCTTGTTCTTCATCTTCTCACCTTCCCTTGAGAAGATTTGTTACTAGTTTAATATTTCCAAGAAAGAGAAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGGGGGGCGTGCTAGTCAAGAAGAGAAGAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCTTCCCCAAATCCACTCCTTCCTTCCTTCCTTCCTTCCTCCCTTGGTTCATTCATTGATTTGATTTTTGCACGGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTCATCTTCCTCTCCGCTACTATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCTCCACGACGATGCCGATGCCGACGCCTCCGAATCCCCCAGGGAAAGGGCCCCCGTGCCCCTCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCGACAAAA                                                                                                                                                                                                                                                                           ]
[-] EMBL CF294014             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGCACTCTTGTTTCACCACCGACAAAATGCGAATCTGAGAAGGTCCAGTGATGGAGTTCTGATATTTATATCATACTTAGTTGATTTGGGAACAGATGTAACCCCTATTGTGGATAAATTCTGTTGTTGAAGTGTAGTACGATGGCAACTGTAACATGAGGATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTGGAGAATTGGGGGCAATGCTGGGAGTGTAGACTTATTAAAACATGAGATTTGGGCTGAAAAAA]


>consensus_1087#0 CATCTCCATTTTCCTCTTCCTCGTCGTTGCGATTTGAGAATTCACCTTCTTCTTCCTCCT CTCCTCTCGCCTCCTACCTCTTGCTGCAGCGCACGGCGCCGCGCCATCATCGAGCTTGAT CTCGTGCTTGTATCCTTGTTCTTCATCTTCTCACCTTCCCTTGAGAAGATTTGTTACTAG TTTAATATTTCCAAGAAAGAGAAGAGGAGAGGAGAGGGTGGTAACGCAGCGTTAGGTGGG GGGGCGTGCTAGTCAAGAAGAGAAGAGAAGGAAGGGAGGCCCAACTGCTCCATCCTCCCT TCCCCAAATCCACTCCTTCCTTCCTTCCTTCCTTCCTCCCTTGGTTCATTCATTGATTTG ATTTTTGCACGGCATTTGAGGAAGAATGTGCCCGCTGAGGGTGATCCTCATCTTCCTCTC CGCTACTATCGCCGGATTCTTCCTCATCCGGGGCCTCAACGCCGATCCCGACCTCCTCCA CGACGATGCCGATGCCGACGCCTCCGAATCCCCCAGGGAAAGGGCCCCCGTGCCCCTCCA TTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGG GAAATACCTTTGGCGCACTCTTGTTTCACCACCGACAAAATGCGAATCTGAGAAGGTCCA GTGATGGAGTTCTGATATTTATATCATACTTAGTTGATTTGGGAACAGATGTAACCCCTA TTGTGGATAAATTCTGTTGTTGAAGTGTAGTACGATGGCAACTGTAACATGAGGATTACA TCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAAT GAGTGGAGAATTGGGGGCAATGCTGGGAGTGTAGACTTATTAAAACATGAGATTTGGGCT GAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)