These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 889 fasta sequence [CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGGAGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGTGAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA] [+] EMBL AU184383 [CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGGAGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGC ] [+] EMBL CF293028 [ TTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGCCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGT ] [+] EMBL AU174956 [ TGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCC ] [+] EMBL AU174955 [ GGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGTGAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA] [-] EMBL CF293027 [ CTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTaaaaaa ] consensusID : consensus_10878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 564 fasta sequence [AAGCTCACCTCTCTTGCTCGACGATCCACACACGAATTTCCTCGACCTCTTCGTTCATCCCAATCTCATCGTTCGATCGATCAACAATTCTCCTCAGCAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGGCGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG-CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATTA] [+] EMBL AU174639 [AAGCTCACCTCTCTTGCTCGACGATCCACACACGAATTTCCTCGACCTCTTCGTTCATCCCAATCTCATCGTTCGATCGATCAACAATTCTCCTCAGCAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGGCGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGGCCCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACT ] [+] EMBL AU071251 [ GCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATTA] [+] EMBL AU071245 [ GCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACNACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGgat ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10878#0 CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCA 60 consensus_10878#1 -------AAGCTCACCTCTCTTGCTC-GACGATCCAC----ACACGAATT--TCCT--CG 44 **** ** ******** * * ** *** **** *** **** * consensus_10878#0 TCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAA-GTTCTCAAGTTCATCGCAGCAGCAG 119 consensus_10878#1 ACCTCTTCGTTCATCCCAATCT-CATCGTTCGATCGATCAACAATTCTCCTC------AG 97 * * **** ** * *** * ****** * * ** * *** * * ** consensus_10878#0 CAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGG 179 consensus_10878#1 CAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGG 157 ****** **************************** ************* ** ****** consensus_10878#0 CGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACA 239 consensus_10878#1 CGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACA 217 ***** ****** **** **** ************************************* consensus_10878#0 GGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGC 299 consensus_10878#1 GGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGA 277 ************************* ******** * ******** * ******* consensus_10878#0 GGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGG 359 consensus_10878#1 GGAAGGT---CGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGGCCAAGAAGG 334 ******* **** **** ************** ********* * *** *** consensus_10878#0 AGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCT 419 consensus_10878#1 AGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGT 394 ***** **** * ** ** * *** * * *** ** * **** * consensus_10878#0 ACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCT 479 consensus_10878#1 ACCACCATTACAGCC-CTTACGGCTACATCATGTAGAATACCATGTGTACACATACCG-T 452 ** **** * ** * * * ** ** * *** ** * ** * consensus_10878#0 GCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAA 539 consensus_10878#1 CCGTATGTA---TGTACACTGGTAGTGTATA---CATCGCGTAGT---GCGAATATTCTT 503 ** ** * * * * * ** * **** **** * * * ** * consensus_10878#0 TCAGGGCGGAATCCAGAATGAGTTTGG-AGGGAGGCTCGTCTTTACGACCTCCCTTCTTC 598 consensus_10878#1 TTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATT 563 * * *** ** * *** ** * ** * * ** * ***** * consensus_10878#0 TTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGA 658 consensus_10878#1 A----------------------------------------------------------- 564 consensus_10878#0 AGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTT 718 consensus_10878#1 ------------------------------------------------------------ consensus_10878#0 CACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCT 778 consensus_10878#1 ------------------------------------------------------------ consensus_10878#0 GATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGT 838 consensus_10878#1 ------------------------------------------------------------ consensus_10878#0 GAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA 889 consensus_10878#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||