These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1411 fasta sequence [AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG-CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG] [+] EMBL AK059170 [AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAAT ] [+] EMBL AK103637 [ ACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG] [+] EMBL AK101305 [ ACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCG ] [+] EMBL AU183891 [ ACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGA ] [+] EMBL AU078327 [ TCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCG CGACGCCGCCGTCGCCGCCGCCGTACGTGCCG CGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATC GGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGA CTGGACGCCGCGCTCTG CTCTG ACCACCATCCGCGCGCGCCTTCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCG CTTCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACT ] [+] EMBL AU078328 [ GTTCCACCCTACATCCCGCCGCCNACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAAaaaaaaa ] [+] EMBL BI807031 [ GACGAAGACGTGCCCGATCGACGCGCTGAAGTCTGAACGCGTGCGTGGAC T CT GGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGAC CCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAAC AACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCCTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGC ATTTGTGTTGTATTAATGTACNACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAAaaaaaaaaa ] consensusID : consensus_10885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [GATTCGGACGCGCTGAACTGACGCGTGCGTGGACGTGCTGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCCTGGTTCAGGGCGTGCGGACCTGGACCCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCGCCTCCTCTACATCACATCTACCTCCCCGTCGCGCTCGACTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTTACGGCGCCTGAACTGAACACAACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA] [+] EMBL BI800864 [GATTCGGACGCGCTGAACTGACGCGTGCGTGGACGTGCTGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCCTGGTTCAGGGCGTGCGGACCTGGACCCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCGCCTCCTCTACATCACATCTACCTCCCCGTCGCGCTCGACTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTTACGGCGCCTGAACTGAACACAACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10885#0 AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAA 60 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCAT 120 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 AGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTC 180 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 ACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTG 240 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 AGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGA 300 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAA 360 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACG 420 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 TCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCT 480 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 CGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGG 540 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 CAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCA 600 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 CCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCC 660 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGT 720 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 TCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCC 780 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 ACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCC 840 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCC 900 consensus_10885#1 ------------------------------------------------------------ consensus_10885#0 GCCGGCGACGAAGACGTGCCCGATC--GACGCGCTGAAGCTGAACGCGTGCGTGGACGTG 958 consensus_10885#1 ---------------------GATTCGGACGCGCTGAA-CTGA-CGCGTGCGTGGACGTG 37 *** *********** **** **************** consensus_10885#0 CTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTG 1018 consensus_10885#1 CTGGGGGG-CTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCC-CTG 95 ******** *********************************************** *** consensus_10885#0 GTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCT-GCACCACCATCCGCGCGCG 1077 consensus_10885#1 GTTCAGGGCGTG-CGGACCTGGAC-CCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCG 153 ** ********* *********** *************** ******************* consensus_10885#0 CCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAA 1137 consensus_10885#1 CCTCCTCTACATCA-CATCTACCTCCCCGTCGCGCTCGA-CTGCTCATCACCTGCGGCAA 211 ******* ****** ************************ ******************** consensus_10885#0 GCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACA-AACGA 1196 consensus_10885#1 GCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCT-TACGGCGCCTGAACTGAACACAACCA 270 ********************************* ******************** *** * consensus_10885#0 AGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCC 1256 consensus_10885#1 AGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCC 330 ************************************************************ consensus_10885#0 TCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTT 1316 consensus_10885#1 TCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTT 390 ******************************************************* **** consensus_10885#0 GTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCA 1376 consensus_10885#1 GTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCA 450 ************************************************************ consensus_10885#0 CGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG 1411 consensus_10885#1 CGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA 485 ************************ * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||