These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 998 fasta sequence [CCCTTGCTGTAACGATACGCTACGTAACGGCATGA-TTTTGTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA-ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC-GAACGAAGGCATCAGGGTATGCCTTC-TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT-AT-CCGGGTG-ATCTGT-GA-TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT] [+] EMBL CF299693 [CCCTTGCTGTAACGATACGCTACGTAACGGCATGA TTTTGTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCTGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT C ] [+] EMBL CF299174 [ ACGTAACGGCATGACATTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACA AAAAAAAAAAAGAAAAAGAAAGAACGTGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCA ] [-] EMBL BM420261 [ TTTTTTTTTTGCAAAANCAAAATTTCA TGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCTCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCAGACAACGGCAGGTCGGAGAGCGAGAGAACAATTACGTGCAGCTCAACACGGACACAC AAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTCACGTTGTCAAAGCCGATGATGCAGAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTAAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAG TTCCACATGGTCCAGTACCTACCGTCATAGTAATCCCGGGGGAATCGGTGGATTTCTCA ] [+] EMBL CB656743 [ AAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGC ] [-] EMBL CB685632 [ AAGAAAGTACATGCACGAAGGATCGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTACCGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACTCCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCTCTTTGAAGGAGAAATTGAATCGTATCGTTTCTGATACCTGCATGCATATGATCCTTCCGCCATTGTTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCTCCGGGAGGCCCGCAGTGGTCTTGAGCCCCTGGAAGGGAGCCACGGAGGT GCCGTCGAAGCCATCACCGAGGGAGCCATTGATAGCTTGCTAGGAGCTATAGAAGAACT ] [-] EMBL CF297908 [ GATGC GAACGAAGGCATCAGGGTATG CTTCTTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTGCGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT] [-] EMBL CF335546 [ CCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT] consensusID : consensus_10886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAATTACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGAAGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTC] [+] EMBL CF301641 [ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAATTACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGAAGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10886#0 CCCTTGCTGTAACGATACGCTACGTAACGGCATGATTTTGTTTTTTTTTTTTTTTTTT-G 59 consensus_10886#1 -----------------------ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 37 * * * **** ****************** * consensus_10886#0 CAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAG 119 consensus_10886#1 CAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAG 97 ******************* *********** **************************** consensus_10886#0 TACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGAT 179 consensus_10886#1 TACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGAT 157 *********** ********** ************************************* consensus_10886#0 AGACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAGAGAACAAT 239 consensus_10886#1 AAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAAT 217 * ************************************************* * ****** consensus_10886#0 TACGTGCAGCTTAACACGGACACACAAAAAAAAAAA--GAAAAAGAAAGAACATGCACGA 297 consensus_10886#1 TACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGA 277 ******************* * * ************ ************** *** *** consensus_10886#0 AGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATG 357 consensus_10886#1 AGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATG 337 ***************** ************************** *************** consensus_10886#0 AAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCA 417 consensus_10886#1 AAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCA 397 ************************************************************ consensus_10886#0 GGGTATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCA 477 consensus_10886#1 GGGTATGCCTTCTTTGCCTCCTC------------------------------------- 420 *********************** consensus_10886#0 AACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGTATCCGGGTGATCTGTGA 537 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGG 597 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 AGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGA 657 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 GTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATA 717 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 ATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAA 777 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 ACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAA 837 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 GCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAA 897 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 GGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGG 957 consensus_10886#1 ------------------------------------------------------------ consensus_10886#0 AGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT 998 consensus_10886#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||