These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1002 fasta sequence [TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG-CCCA-A-GGGGTGGGC-CATCGCGGACTTCATGGAGAAG-CTGGA-GGGGCTGATGGCGCGCGGGCGGTACGGGTCC-GGGGAGC-TGCTGGGCA-CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC-GGAGCTC-TTCCGCGTGC-TCC-GGCTGGTGGAGATGGACGTCGC-GATGGTCAAGGCCGC-CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC-GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC-TC-GC-TGTGACGACGGAC-GCA-CCGCGTGGTGCCCAAC-TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA-ACACTGAA-ACCATGTATA-CGAGAAATGGATGGGATAGCCAACTACGTGCACTTAATATGCTGCATAAAAAAAAAA] [+] EMBL AK070436 [TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG CCCA A GGGGTGGGC CATCGCGGACTTCATGGAGAAG CTGGA GGGGCTGATGGCGCGCGGGCGGTACGGGTCC GGGGAGC TGCTGGGCA CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCACTT ] [+] EMBL AK104204 [ ACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG CCCA A GGGGTGGGC CATCGCGGACTTCATGGAGAAG CTGGA GGGGCTGATGGCGCGCGGGCGGTACGGGTCC GGGGAGC TGCTGGGCA CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACG ] [+] EMBL BM419490 [ GGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAGCCCCA A GGGGTGGCCACATCGCGGACTTCATGGAGAAG CTGGA GGGCTGATGGCGCGCAGGCGGTACGGGTCC GGGGAGC TGCTGGGCACCGGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCACCCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCAaaaaa ] [+] EMBL BM422114 [ tagtaagtc CCCATANGGGGT GGC CATCGCGGACTTCATGGAGAAGTCTGGATGGGGCTGATGGCGCGTCGGCGGTACGGGTCCAGGGGAGCTTGCTGGGCA CGGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGTCGGAGGGCGGCGTGGAGGAGCGCGTCGCGACAGGAGCTCGTTCCGCGTGCGTCCAGGCTGGTGGAGATGGACGTCGCAGATGGTCAAGGCCACACGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGCAGCGCTGCCGCCAGGCCATCCTCGTCGCGCTCATCAGCATGTGACGACGGACAGCACCCGCGTGGTGCCCAACATGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAATACACTGAATACCATGTATACCGAGAAAnatanttaa ] [+] EMBL BE228320 [ cgnGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCNAGGANGAGACCGTCAAGGNGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATANCCACTATACACNGTTGCAANTGGTCATCAGGTTTTTCGTGTATGTNTACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCTTGTNTN CGAGAAATGGATGG ] [+] EMBL AT003724 [ AGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCACTTATTATGCTGCATAAAAAAAAAA] consensusID : consensus_10893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGCAGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCGCCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGACNCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCTGGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGGCNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAACCCGC] [+] EMBL AA754586 [GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGCAGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCGCCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGACNCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCTGGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGGCNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAACCCGC] consensusID : consensus_10893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [NGGAGCTCCGTCAAGGAGCGCGTCCAGATGGCGCGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCGCNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATTTCTNGCANANCCCCTNTTCNCAGTTGCNGCTGGTCTTCAGNTNTTTCGTGTATGTATACCTGGGTTTCNGTAGCATTTNCAATCAAACGCNCNATCCATGNNTCCGNNGAATGNATGNNATANNCAANTACGNGCACTTCTTATGCTGCATAAAAAAAAAA] [+] EMBL AT003763 [NGGAGCTCCGTCAAGGAGCGCGTCCAGATGGCGCGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCGCNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATTTCTNGCANANCCCCTNTTCNCAGTTGCNGCTGGTCTTCAGNTNTTTCGTGTATGTATACCTGGGTTTCNGTAGCATTTNCAATCAAACGCNCNATCCATGNNTCCGNNGAATGNATGNNATANNCAANTACGNGCACTTCTTATGCTGCATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10893#0 TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCG 60 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 CCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTC 120 consensus_10893#1 -------------GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGC 47 consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 CTAAACCCC-ACATCCCCGCCG---CTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCG 176 consensus_10893#1 AGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCG 107 consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 CCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAG 236 consensus_10893#1 CCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAG 167 consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 GAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCAC 296 consensus_10893#1 GAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCAC 227 consensus_10893#2 --------------------------NGGAGCTCCGT-CAAGGAGCGCGTCCAGATGGCG 33 * ***** * *** *** * * * consensus_10893#0 CGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCG 356 consensus_10893#1 CGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCG 287 consensus_10893#2 CGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCG 93 *** * * * * ** ** * *** * * ** ** consensus_10893#0 CGGCGCGTGCCGTCGGCCAT---CTCCCCCGACCGCCG----GCGCCGGACGGCGCTGAC 409 consensus_10893#1 CGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGAC 347 consensus_10893#2 CNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATT----TCTNGCANANCCCCTNT 149 * * * * * ** * ** * * * * * consensus_10893#0 GCAGGGGGAGCCGCCGAA-CTACGAGA-TCGGGTGGAAGCGC-ACCAAGAAGCTGCCGCT 466 consensus_10893#1 NCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCT 407 consensus_10893#2 TCNCAGTT-GCNGCTGGT-CTTCAGNTNTTTCGTGTATGTAT-ACCTGGG---TTTCNGT 203 * * ** ** * ** * * *** * * *** * * * * consensus_10893#0 GGAGAAGCCCAAGGGGTGGGCCATC-GCGGACTTCATGGAGAAGCTGGAGGGGCTGATGG 525 consensus_10893#1 GGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGG 467 consensus_10893#2 AGCATTTNCAATCAAACGCNCNATCCATGNN-TCCGNNGAATGNATGNNATANNCAANTA 262 * * * * * *** * * * ** * * consensus_10893#0 CGCGCGGGCGGTACGGGTCCGGGGAGCTGCTGGGCACAGTGGCCGGCGTGGTGACGGAGC 585 consensus_10893#1 CNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAAC 527 consensus_10893#2 CGNGCACTTCTTATGCTGCATAAAAAAAAAA----------------------------- 293 * * ** * * consensus_10893#0 GCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGA 645 consensus_10893#1 CCGC-------------------------------------------------------- 531 consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 CGGAGCTCTTCCGCGTGCTCCGGCTGGTGGAGATGGACGTCGCGATGGTCAAGGCCGCCG 705 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 TCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGCGCGCTGCCGCCAGGCCA 765 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 TCCTCGTCGCGCTCTCGCTGTGACGACGGACGCACCGCGTGGTGCCCAACTGTAATTCTG 825 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 ATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTT 885 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 TCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAAACACTGAAACCATGTATA 945 consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#0 CGAGAAATGGATGGGATAGCCAACTACGTGCACTTAATATGCTGCATAAAAAAAAAA 1002 consensus_10893#1 --------------------------------------------------------- consensus_10893#2 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||